Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq286 91.5 3e-13 seq2 89.7 9e-13 >seq286 Length=987428 Score = 91.5 bits (100), Expect = 3e-13 Identities = 164/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 39122 TAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGT 39181 || |||||| ||||| || || || || ||||| | | |||| ||||| ||| || Sbjct 834290 TAGACATGCGAAATCGGTGTGCAAGCCCTCGTCTCGACTAATAAGCTCATTGGAAAATGT 834231 Query 39182 TAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAA 39241 | || ||||| | || | || || | ||| |||||||| ||||| | |||||| Sbjct 834230 CAGGCCAGGCATAAGACCACGTTTCTTGATCCAGAATATTGAGGCAAACGACCCAGAAAA 834171 Query 39242 GAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATC 39301 |||||| || |||||| ||||| || | || | | | |||| || | | | || Sbjct 834170 GAATATCCCTTCCACAGCAGCAAAGGCAACTAGACGTTCCGCAAAGGTTGAATGTTTGTC 834111 Query 39302 TAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGC 39361 | ||||||| |||| |||||||| ||||| ||||| |||| || | ||||| || Sbjct 834110 TGAAATCCATTTTAGAGCCCAATCAGCTTTGCGCTTGATGCAAGGAATGGTGTCTATGGC 834051 >seq2 Length=2111947 Score = 89.7 bits (98), Expect = 9e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 39125 ACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 39184 ||| |||||||||||||| || || ||||| ||| || | ||||| ||| ||||| Sbjct 203935 ACAAGCAAAATCCGTATGCAAGCCCTCGTCTCTACTGATGAGCTCATTGGAAAATGTTAA 203994 Query 39185 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 39244 || ||||| || || | || || | ||||||||| | || ||| || |||||| || Sbjct 203995 ACCGGGCATCAAGCCACGTTTCTTCAACCAAAATATGGCCGCGAAAGAACCAGAAAAAAA 204054 Query 39245 TATACCCTCCACACACGCAAATGC 39268 ||| || || ||||| ||||| || Sbjct 204055 TATGCCTTCGACACAGGCAAACGC 204078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905132153172000