Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq286 138 1e-26 seq319 93.3 5e-13 seq47 89.7 6e-12 seq202 87.8 2e-11 >seq286 Length=987428 Score = 138 bits (152), Expect = 1e-26 Identities = 207/287 (72%), Gaps = 9/287 (3%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 ||||||||||| || || | || ||| ||| | ||||| ||||| | ||| |||||| Sbjct 832086 CCTTCGTCGCGGCTAATGAGCTCATTGGAAAAAGTCAGGCCAGGCATCAAGCCTCGCTTC 832145 Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 || | ||| ||||||| ||| |||| ||||||||| |||||||| || || || ||||| Sbjct 832146 TTCATCCAGAAGATGGACGC-GAAAGAGCCCGAGAAGAAGATGCCTTCAACAGCAGCAAA 832204 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTC-CTTGTTGATCCACTTCATCGCCC 869357 | | | || || |||| || | || || | | |||||| |||| |||| Sbjct 832205 CGCCACCAAGCGTTCACCAAAAGT----TGACCGTCGGTCGGAGATCCAGTTCAGTGCCC 832260 Query 869358 AGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG-CGAAAGAGGTGGTCCTTT 869416 |||| ||||| | | || |||| | || || | |||| ||||| |||| || | Sbjct 832261 AGTCTGCCTTGCGCTTGACACACGGAATGGTCTCCACGGCGTCGAAA-AGGTACTCGCGT 832319 Query 869417 TCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 ||||| | |||||||| |||||||||||| || |||||||| ||||| Sbjct 832320 TCGGCAGCGTCCTTGATATAGGTGTCGATGAGAAGCGAATACGTCTC 832366 >seq319 Length=928647 Score = 93.3 bits (102), Expect = 5e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGC 19112 ||||||||||| || || ||||| ||| | || || | |||||||| || || | Sbjct 716326 ATCGGCGGCACTGTCACCTGCGTCATCCGCCATGTCCCATCTGGCCTCGGTGAACCCGTC 716267 Query 19113 TTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGA 19172 ||||||||| | || ||| | |||| || || ||||| |||||||| |||||||| ||| Sbjct 716266 TTTGACAAGTTTGAAGCCACACTCGGGCATGCGATGCTCTCGATCCCTGCCACCAAAGGA 716207 Query 19173 TTCGAGATTGG 19183 || ||||| || Sbjct 716206 TTTGAGATCGG 716196 >seq47 Length=763068 Score = 89.7 bits (98), Expect = 6e-12 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 1726696 GGCGGCGCG-CACGGCGTCGAGTGCCGTCGCCACGCTCCCGTCGGTGCCGTTCTTGAAGC 1726754 ||| ||||| |||| | || | || || |||| ||||| || ||| || ||||||| Sbjct 169831 GGCAGCGCGGCACG-CATCAATCGCGATCCCCACACTCCCATCCGTGGAATTTTTGAAGC 169889 Query 1726755 CGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGCGCG 1726814 | ||| || || ||| || || | | |||||||||||||||| ||| |||||||| | Sbjct 169890 CCGTGGGCATCGACAGCGCAGATGTGAGCTCGCGGTGCACCTGGGACTCAGTCGTGCGTG 169949 Query 1726815 CGCCCACGGCGCCCCACGCCACCAGGTCTGC 1726845 | || | |||||||||| ||| ||||| || Sbjct 169950 CACCAATCGCGCCCCACGACACGAGGTCCGC 169980 >seq202 Length=493159 Score = 87.8 bits (96), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 1592218 CGATCTTGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCG 1592277 |||| | || |||||| | || ||||||||||||||||||||| |||| ||||||||||| Sbjct 43804 CGATGTCGGCTGCAAGACGGTAGCCAACATGATCAAGGGCAAGACGCCAGAGGAGATCCG 43745 Query 1592278 CAAGACCTTTAACATC 1592293 |||| ||| |||||| Sbjct 43744 CAAGCTCTTCAACATC 43729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107111298007780