Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2 145 6e-30 seq286 129 5e-25 seq335 87.8 1e-12 >seq2 Length=2111947 Score = 145 bits (160), Expect = 6e-30 Identities = 230/323 (71%), Gaps = 9/323 (3%) Strand=Plus/Minus Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGG 44023 || ||||| ||||||| |||| || | | || || || || ||| | ||||| Sbjct 204255 ATCGAAAACGTTCATTCAGAAACATATTCTTTGCTCATCGACACCTACGTTAAAGACA-- 204198 Query 44024 CACGAGAAGCATCG-AT-TGTTTAATGCGATAGAAACAGTAC-CTGCGATTAAACATAAA 44080 | |||||| | | || | ||||| ||| | |||||||| |||| |||||| | || Sbjct 204197 CCCGAGAACAAGCCCATCTCTTTAACGCGCTTGAAACAGTGGACTGC-ATTAAAAAAAAG 204139 Query 44081 GCAGACTGGGCCCTTAAATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTC 44137 || || ||||| | |||| | | |||| | | ||| || || || || || Sbjct 204138 GCGGATTGGGCATTGCGATGGGTCGAAGATTCCACCGTTTCGTTCGGGAGTCGCCTCGTG 204079 Query 44138 GCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTA 44197 |||||||| ||| |||||||| || ||||| || || || ||||||||||||||||| Sbjct 204078 GCGTTTGCCTGTGTCGAAGGCATATTTTTTTCTGGTTCTTTCGCGGCCATATTTTGGTTG 204019 Query 44198 AAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAA 44257 |||||||| || |||||||| || || || ||||| |||||| | || ||| | || || Sbjct 204018 AAGAAACGTGGCTTGATGCCCGGTTTAACATTTTCCAATGAGCTCATCAGTAGAGACGAG 203959 Query 44258 GGCTTACATTGCGATTTTGCTTG 44280 ||||| ||| ||||||||||| Sbjct 203958 GGCTTGCATACGGATTTTGCTTG 203936 >seq286 Length=987428 Score = 129 bits (142), Expect = 5e-25 Identities = 374/567 (66%), Gaps = 24/567 (4%) Strand=Plus/Minus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || |||||||||||||| || || ||||||| |||||||| ||||| ||| | || | Sbjct 832621 ATCTGGCAAATGTACAAGAAGGCTGAGGCGTCGTTTTGGACTGCAGAGGAAATGGACCTC 832562 Query 43790 ACTAAAGACTTAGCACATTGGATT----GCATTAAAACCACAA-GAAAAACATTTTATAT 43844 | ||||| | | |||| || |||| | |||| || ||||| || | Sbjct 832561 TCGAAAGATATTCATGACTGGACAACCCGCCTTAA--CGACAACGAGCGCCATTTCATCT 832504 Query 43845 CTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTC 43904 | || | || || || || || || || || ||||| || || | || | Sbjct 832503 CCCATGTCCTCGCTTTCTTCGCAGCCTCGGATGGTATTGTCAACGAGAACCTTGTCGAGC 832444 Query 43905 GGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCA 43964 | ||| | | || || ||| | | || || |||||||| ||||| || ||||| | Sbjct 832443 GCTTTTCCAACGAGGTCCAAGTTGCCGAGGCTCGATGTTTCTATGGCTTCCAAATCATGA 832384 Query 43965 TAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGG-- 44022 | || || ||||| || || | ||| ||||| || || || || ||||| || | Sbjct 832383 TGGAGAACATTCACTCAGAGACGTATTCGCTTCTCATCGACACCTATATCAAGGACGCTG 832324 Query 44023 --GCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAA 44079 | ||| || | | | | || | || | || || | || || | | || | || Sbjct 832323 CCGAACGCGA-GTACC---TTTTCGACGCCGTGGAGACCATTCCGTGTG-TCAAGCGCAA 832269 Query 44080 AGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATT-----CTTTTGGAGAACGACTT 44134 ||||||||||| || || ||||| | | | || ||||||| ||||| | Sbjct 832268 GGCAGACTGGGCACTGAACTGGATC--TCCGACCGACGGTCAACTTTTGGTGAACGCTTG 832211 Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || |||||||| | ||| |||||||| ||||| || || || || ||| |||| || ||| Sbjct 832210 GTGGCGTTTGCTGCTGTTGAAGGCATCTTCTTCTCGGGCTCTTTCGCGTCCATCTTCTGG 832151 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 | ||||| ||||| ||||||||||| |||| ||||| |||||| | || || || || Sbjct 832150 ATGAAGAAGCGAGGCTTGATGCCTGGCCTGACTTTTTCCAATGAGCTCATTAGCCGCGAC 832091 Query 44255 GAAGGCTTACATTGCGATTTTGCTTGC 44281 ||||| | || ||| ||||| ||| Sbjct 832090 GAAGGAATGCACACCGACTTTGCATGC 832064 >seq335 Length=51571 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 44149 TGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGG 44208 ||| |||||||||||||| || ||||||||||| || | | |||| | |||||||| || Sbjct 19886 TGTCGAAGGCATTTTCTTCTCCGGATCGTTTGCAGCGGTCTATTGGATCAAGAAACGGGG 19945 Query 44209 TTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTG 44268 | ||||| || ||||| || || || || |||| || | |||||||| | ||| Sbjct 19946 GCTTATGCCAGGTTTGACTTTCTCGAACGAACTAATCAGCAGAGATGAAGGGCTTCATAC 20005 Query 44269 CGATTTTGCTTGCTTGTT 44286 ||| || || || || || Sbjct 20006 CGACTTCGCCTGTTTATT 20023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454353041700