Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq308 91.5 2e-13 seq2 87.8 2e-12 >seq308 Length=957167 Score = 91.5 bits (100), Expect = 2e-13 Identities = 310/476 (65%), Gaps = 14/476 (3%) Strand=Plus/Minus Query 104966 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTT 105025 ||||| ||||| | ||| ||||| || |||||||| ||||||||| | |||| Sbjct 618626 AATCAGAAGAACCTTGGTACCATCAAATCCTCGAATCTCTGCACAGAAATCATCGAATAC 618567 Query 105026 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 105085 | | || || || || || |||||||| || || | |||||||||| | Sbjct 618566 TCCTCCCCTGACGAAACCGCCGTTTGTAACCTTGCCTCTCTGGCTCTCCCCACATTC--- 618510 Query 105086 GATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACC 105145 ||| || || | | ||| || | | | || |||||||| || || ||| ||| || Sbjct 618509 -ATCACGA-ACGGAAA-ATTCGACTTTAAGAAGCTCCACGATGTCACCAAAGTTGTTGCC 618453 Query 105146 AAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAA 105202 || || || |||| ||||| || | || || ||| ||| ||||| Sbjct 618452 TTCAATCTGAATCGAGTCATTGACGTCAACTACTATCCTGTTCCCGAG---GCTCGGCGG 618396 Query 105203 TCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT 105262 || || ||| | || || || || || ||||||| |||||||| || || | ||||| Sbjct 618395 TCAAACATGCGCCATCGACCCATCGGAATCGGTGTGCAGGGTCTGGCCGACGCCTTCATG 618336 Query 105263 -CTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGA 105321 || || | ||||||| || | ||| ||||| |||| | || || || Sbjct 618335 GCTCTGCATATGC-CATTTGACTCTCCAGCAGCCAAGGAGCTCAACATTCAAATCTTCGA 618277 Query 105322 GACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATA 105381 ||| || ||||||| || || || ||||| | ||| | || ||| ||||||||||| Sbjct 618276 GACGATCTATCACGGTGCACTGGAAGCGAGCGCTGAGATAGCTGAGAAGGATGGTCCATA 618217 Query 105382 TGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGG 105437 |||||||| | || ||| ||| || || ||| || |||||| |||||| Sbjct 618216 TGAAACCTGGGTTGGCAGTCCGGCTCAGCAGGGACAGCTCCAGTTTGATTTGTGGG 618161 >seq2 Length=2111947 Score = 87.8 bits (96), Expect = 2e-12 Identities = 277/419 (66%), Gaps = 14/419 (3%) Strand=Plus/Minus Query 94526 TCCTGGCATTCTTTGCTGGATCCGATGGAATTGTTTTTGAGAATATCAATAACAACTTTG 94585 |||| || || ||||| | || ||||| || || || ||| || | | |||||| Sbjct 204368 TCCTCGCCTTTTTTGCCGCGTCTGATGGCATCGTGAACGAAAATCTCGTTCAAAACTTTT 204309 Query 94586 CTGATGAGGTGCAATCCTCTGAAG-CGAGATCCTTCTATGCGTATCAGTGTCATAAT-GA 94643 || ||||| | |||||| || || | |||||||| | | ||| |||| || || Sbjct 204308 CTTGCGAGGTTGGA-CCTCTGGAGGCGCGCTCCTTCTACGGTTTCCAGA-TCATGATCGA 204251 Query 94644 AATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGA 94703 || || ||| || ||||| | ||||| |||| || |||| || | || Sbjct 204250 AAACGTTCATTCAGAAACATATTCTTTGCTCATCGACACCTACGTTAAAGACAC--CCGA 204193 Query 94704 GAAGAAGC--AGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGAT 94761 ||| |||| | |||||| | || | ||||||| || ||| |||| || |||||| Sbjct 204192 GAACAAGCCCATCTCTTTAACGCGCTTGAAACAGTGGACTGCATTAAAAAAAAGGCGGAT 204133 Query 94762 TGGGCTATGAAGTGGTTTGATACAAAGTC--GCGTTCCTTTGCTGAG-CGACTCTTCGCA 94818 ||||| || ||| | || | | || |||| | || ||| || ||| | || Sbjct 204132 TGGGCATTGCGATGGGTCGA---AGATTCCACCGTTTCGTTCGGGAGTCGCCTCGTGGCG 204076 Query 94819 TTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAG 94878 ||||| ||||| || || || || || |||||||| ||| || || | |||| | ||| Sbjct 204075 TTTGCCTGTGTCGAAGGCATATTTTTTTCTGGTTCTTTCGCGGCCATATTTTGGTTGAAG 204016 Query 94879 AAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 || || || | ||||| ||| | || ||||| ||||| ||| | | |||||||| Sbjct 204015 AAACGTGGCTTGATGCCCGGTTTAACATTTTCCAATGAGCTCATCAGTAGAGACGAGGG 203957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583258321141600