Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq224 196 1e-44 seq1 156 1e-32 seq113 145 2e-29 seq2 107 6e-18 >seq224 Length=1037722 Score = 196 bits (216), Expect = 1e-44 Identities = 264/368 (72%), Gaps = 0/368 (0%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 |||||||||||||| || ||||| | | || |||||||| | ||||||| ||||| | Sbjct 147447 CCCGAAGAAATTTCTTCCATGGTCCTCCTCAAGATGAAGGAGACTGCTGAATCATATCTC 147506 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || | | || ||||||| |||||||| || || || ||||| || |||||||| Sbjct 147507 GGCGTTCCGACAAACAATGCTGTCATTACTGTCCCCGCGTACTTTAACGACTCCCAGCGT 147566 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || |||||||| || |||| || |||| | || || || |||| || || || Sbjct 147567 CAAGCCACAAAAGACGCCGGCACGATCTCGGGTATGAACGTGCTTCGAATCATCAACGAG 147626 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 ||||| || || || || || ||||| || || || | | || | || || || Sbjct 147627 CCCACGGCCGCTGCTATCGCCTATGGTCTCGACAAGAAGGTTGTCGGCGAGCGCAACGTT 147686 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || || || ||| | ||||| || ||||| ||||| || || || || |||| ||||| Sbjct 147687 CTCATCTTCGATCTCGGTGGAGGAACTTTCGATGTTTCTCTCCTGACGATTGAGGAGGGT 147746 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || ||||| || ||||| || ||||||||||| ||||| || ||||| ||||| Sbjct 147747 ATCTTCGAGGTTAAGGCTACTGCCGGAGATACACATCTGGGTGGTGAGGATTTCGATAAC 147806 Query 349892 CGTCTCGT 349899 || ||||| Sbjct 147807 CGCCTCGT 147814 >seq1 Length=2331425 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | ||||| || || || || ||||| || || || || ||||| Sbjct 482362 CATGCCACCACGCAGGCGAAGAACGAGGTGGAGCGTTGACTCCTTCTGGATGTTGTAATC 482421 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | ||||| || || || ||||| || || || || ||||| || |||||||| || Sbjct 482422 AGAAAGAGTTCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATTAGGCGCTGCTGATCGGG 482481 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || ||||||||||| || || || ||||| || || | || || | || Sbjct 482482 AGGAATGCCCTCCTTATCCTGAATCTTTGCCTTGACATTGTCGATGGTGTCGGAAGACTC 482541 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || | ||||| ||||| | ||| || |||||||||||||| Sbjct 482542 GACTTCCAGCGTGATCGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCAT 482592 Score = 138 bits (152), Expect = 3e-27 Identities = 156/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| ||||| || ||| || |||||||| ||||| || || || ||||| || || | Sbjct 481930 CAAG-TGAAGGGTGCTCTCCTTCTGAATATTGTAATCCGACAAAGTACGCCCGTCCTCCA 481988 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 ||| || || |||||||| || || ||||| ||||||||||| || || |||||||||| Sbjct 481989 ATTGCTTCCCGGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTGAA 482048 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || ||||| ||||||| ||| || | || ||||| | || | ||||||| Sbjct 482049 TCTTCGCCTTCACATTGTCAATCGTATCCGAAGACTCGACTTCCAACGTGATCGTCTTTC 482108 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || | || || || || || ||||| Sbjct 482109 CCGTCAAAGTCTTCACGAAGATTTGCAT 482136 Score = 93.3 bits (102), Expect = 1e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | | || ||||| ||||| || ||||| || ||||| ||||| || Sbjct 482874 CATGCCGCCACGCAGACGCAGGACAAGGTGAAGGGTCGACTCCTTCTGAATGTTATAGTC 482933 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||||| ||||| || || || || || ||||| || ||||| ||||||||||| || || Sbjct 482934 AGATAGGGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGACGTTGCTGGTCGGG 482993 Query 140627 AGGAAT 140632 || || Sbjct 482994 CGGGAT 482999 >seq113 Length=2004859 Score = 145 bits (160), Expect = 2e-29 Identities = 157/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| |||||||| ||||| || ||||| || |||||||| | || || |||||||| | Sbjct 833886 CAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTCCA 833945 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || ||||| || ||||| | || || || ||||| || || || || || ||||| | Sbjct 833946 GCTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCCTGGA 834005 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || || || ||||| | ||| || | || ||||| || || | ||||||| Sbjct 834006 TCTTGGCCTTGACGTTGTCAATGGTATCCGAGGACTCGACTTCCAGGGTGATGGTCTTTC 834065 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || |||||||| || ||||||||||| Sbjct 834066 CCGTCAGTGTTTTGACGAAAATCTGCAT 834093 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 140532 AGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGT 140591 ||||| ||||||||||| || ||||| |||||||| || | || ||||| || || || Sbjct 833605 AGATGCAGAGTAGACTCCTTCTGAATGTTATAATCGGAAAGAGTGCGCCCGTCCTCGAGC 833664 Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || || || || ||||| | ||| ||||| ||||| ||||| || || || ||||| || Sbjct 833665 TGCTTGCCCGCGAAGATCAAACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATC 833724 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || ||||| || || || || | || || | || || || || |||| ||||| || Sbjct 833725 TTTGCTTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTAATAGTCTTCCCA 833784 Query 140712 GTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || ||||| |||||||| Sbjct 833785 GTGAGGGTCTTGACAAAGATCTGCAT 833810 Score = 87.8 bits (96), Expect = 5e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| || || | | || ||||||||||| || |||||||| ||||| || || || Sbjct 834091 CATACCGCCGCGAAGACGGAGCACAAGATGAAGGGTGGACTCTTTCTGAATGTTGTAGTC 834150 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || ||||||||||| || || || || |||||||| ||||| || || || || Sbjct 834151 TGAGAGGGTACGCCCATCTTCGAGCTGCTTCCCGGCAAAGATCAGACGCTGTTGGTCGGG 834210 Query 140627 AGGAAT 140632 || || Sbjct 834211 CGGGAT 834216 >seq2 Length=2111947 Score = 107 bits (118), Expect = 6e-18 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 223702 AGCAAATTCTGTATGTAATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCC 223761 |||||| || ||||| || |||| ||||| || | ||||| ||||||||||| || Sbjct 203938 AGCAAAATCCGTATGCAAGCCCTCGTCTCTACTGATGAGCTCATTGGAAAATGTTAAACC 203997 Query 223762 AGGCATTAAACCTCTCTTTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTAT 223821 ||||| || || | || |||| ||||||||| || |||| || ||||||||||| Sbjct 203998 GGGCATCAAGCCACGTTTCTTCAACCAAAATATGGCCGCGAAAGAACCAGAAAAAAATAT 204057 Query 223822 ACCTTCTACACAAGCAAACGCTACTAATCGTGTTGCAAAATTTGAATCTTTG---TCTCC 223878 ||||| ||||| |||||||| || | || | | || ||| | || ||| | Sbjct 204058 GCCTTCGACACAGGCAAACGCCACGAGGCGACTCCCGAA---CGAAACGGTGGAATCTTC 204114 Query 223879 TATCCATTTTAATGCCCAATCTGCTTTTTTCTTAATACA 223917 | |||| ||||||||||| || ||||| ||||| || Sbjct 204115 GACCCATCGCAATGCCCAATCCGCCTTTTTTTTAATGCA 204153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515247799173020