Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq286 116 4e-21 seq308 104 3e-17 >seq286 Length=987428 Score = 116 bits (128), Expect = 4e-21 Identities = 347/527 (66%), Gaps = 10/527 (2%) Strand=Plus/Plus Query 59595 TATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTG 59654 || |||||||| | ||||||||| | | || || ||||||| || ||| | Sbjct 833742 TACAAGAAAGCTCAAGCCTCATTCTGGACAGCTGAAGAACTTGACCTTTCCCATGACTTC 833801 Query 59655 AAGGATTGGGAC---AAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCC 59711 ||| ||| || || ||||| | || |||| | |||| || | || || || Sbjct 833802 GTGGACTGGAACTTCAATCTCAACCATGATGAGCGGTATTTTATATCGCATGTTCTTGCT 833861 Query 59712 TTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGAT 59771 ||||| ||||| ||||| ||||| | || || | | | | |||| || Sbjct 833862 TTCTTTGCGGCCTCAGATGGCATTGTAAACGAGAACCTCGTCGAAAGGTTTTGTGGTGAA 833921 Query 59772 GTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCAC 59831 || ||| | ||||||| || || ||||| | | ||| | | ||| |||||| Sbjct 833922 GTGCAGGTACCCGAGGCGCGTTCCTTCTATGGCTTTCAAATCATGATGGAGAATATCCAT 833981 Query 59832 TCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGT 59891 ||||| ||||| ||| | | |||||| | ||||||||||| | ||| ||| Sbjct 833982 TCCGAAACGTATTCGTTGCTTATCGATGGCTACATCAAGGATCCGCAGGAGCGGGCCCAC 834041 Query 59892 CTGTTCCGTGCCATAGAGA-CGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCA 59950 || ||| |||||||| | | | || ||| | || | ||||| || ||||| | | Sbjct 834042 CTTTTCGACGCCATAGACACCATTCCTTGCA-TCAAGCGCAAAGCTGATTGGGCTCTAAA 834100 Query 59951 GTGGA--TGAGTCCTGGA-GCATCATTTGCACAACGTCTCATAGCTTTTGCATGC-GTGG 60006 |||| | || | | || | ||||| ||||||| | || ||||| ||| |||| Sbjct 834101 ATGGATTTCAGACAAACATTCAACCTTTGCGGAACGTCTAGTTGCCTTTGC-TGCTGTGG 834159 Query 60007 AAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCA 60066 |||| || ||||| ||||| ||||| | || |||||| |||| || ||||| || | Sbjct 834160 AAGGGATATTCTTTTCTGGGTCGTTTGCCTCAATATTCTGGATCAAGAAACGTGGTCTTA 834219 Query 60067 TGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGC 60113 |||| ||||||| || ||||| ||||| ||| || ||||||||| Sbjct 834220 TGCCTGGCCTGACATTTTCCAATGAGCTTATTAGTCGAGACGAGGGC 834266 Score = 107 bits (118), Expect = 2e-18 Identities = 293/442 (66%), Gaps = 9/442 (2%) Strand=Plus/Minus Query 59677 ACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTG 59736 || |||||| ||||||||| ||||| || |||||||| || ||||| |||| Sbjct 832524 ACAACGAGCGCCATTTCATCTCCCATGTCCTCGCTTTCTTCGCAGCCTCGGATGGTATTG 832465 Query 59737 TGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGT 59796 | | || || | | | | ||||||||| || ||||| |||||||||| || | | Sbjct 832464 TCAACGAGAACCTTGTCGAGCGCTTTTCCAACGAGGTCCAAGTTGCCGAGGCTCGATGTT 832405 Query 59797 TCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCG 59856 |||| | | || | | ||| || ||||| |||||||| ||||| | |||| Sbjct 832404 TCTATGGCTTCCAAATCATGATGGAGAACATTCACTCAGAGACGTATTCGCTTCTCATCG 832345 Query 59857 ATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGT--CTGTTCCGTGCCATAGAGACGTC 59914 | | | ||||||| | | || | || || || ||| ||| | ||||| Sbjct 832344 ACACCTATATCAAGGACGCTGCCGA--ACGCGAGTACCTTTTCGACGCCGTGGAGACCAT 832287 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGA--GTCCTGGAG-CATC 59971 || || || | || ||||| ||||| || | ||||| | || | || | Sbjct 832286 TCCGTGTGTCAAGCGCAAGGCAGACTGGGCACTGAACTGGATCTCCGACCGACGGTCAAC 832227 Query 59972 ATTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGT 60030 |||| |||| | | || ||||| ||| || ||||| ||||||||||| ||||| | Sbjct 832226 TTTTGGTGAACGCTTGGTGGCGTTTGC-TGCTGTTGAAGGCATCTTCTTCTCGGGCTCTT 832168 Query 60031 TCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACG 60090 || | || |||||| | || ||||| ||| | ||||| ||||||| ||| ||||| | Sbjct 832167 TCGCGTCCATCTTCTGGATGAAGAAGCGAGGCTTGATGCCTGGCCTGACTTTTTCCAATG 832108 Query 60091 AGCTGATTTCCCGGGACGAGGG 60112 |||| ||| ||| ||||| || Sbjct 832107 AGCTCATTAGCCGCGACGAAGG 832086 >seq308 Length=957167 Score = 104 bits (114), Expect = 3e-17 Identities = 250/375 (67%), Gaps = 10/375 (3%) Strand=Plus/Minus Query 19844 AAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATG 19903 || || |||||||||||| | || | ||||| || || || || || || |||||||| Sbjct 618632 AAATCGAATCAGAAGAACCTTGGTACCATCAAATCCTCGAATCTCTGCACAGAAATCATC 618573 Query 19904 GAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGCCTGCCGACT 19963 || ||| || ||||| || ||||| ||||| || || || ||| || || || Sbjct 618572 GAATACTCCTCCCCTGACGAAACCGCCGTTTGTAACCTTGCCTCTCTGGCTCTCCCCACA 618513 Query 19964 TTCGTCAAGGCCTCCTCCTTCGACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACG 20023 ||| ||| | | ||||||||| || | |||| || ||| || || | Sbjct 618512 TTCATCACGAACGGAAAATTCGACTTTAAGAAGCTCCACGATGTCACCAAAGTTGTTGCC 618453 Query 20024 CGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCC---GACCGAGGCGGCGCGCAAG 20080 ||||||||||| ||||| || |||| || || ||||||| ||| | Sbjct 618452 TTCAATCTGAATCGAGTCATTGACGTCAACTACTATCCTGTTCCCGAGGCTCGGCG---G 618396 Query 20081 TCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATG 20140 || || |||||||| || || |||| ||||| || ||||| |||||||||| |||||| Sbjct 618395 TCAAACATGCGCCATCGACCCATCGGAATCGGTGTGCAGGGTCTGGCCGACGCCTTCATG 618336 Query 20141 ATGCTCGGCCTCT--CATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCG 20198 |||| || | | |||| ||| ||| || |||||||||| ||||||| Sbjct 618335 --GCTCTGCATATGCCATTTGACTCTCCAGCAGCCAAGGAGCTCAACATTCAAATCTTCG 618278 Query 20199 AGGCCGTGTACCACG 20213 || | | || |||| Sbjct 618277 AGACGATCTATCACG 618263 Score = 96.9 bits (106), Expect = 4e-15 Identities = 201/296 (68%), Gaps = 10/296 (3%) Strand=Plus/Plus Query 78864 CATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCT 78923 ||||||| | |||||||| ||||| || ||||| |||| ||||| ||||||||||| Sbjct 618336 CATGAAGGCGTCGGCCAGACCCTGCACACCGATTCCGATGGGTCGATGGCGCATGTTTGA 618395 Query 78924 CTTTCGGGCCGCCTCGGTC---GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACG 78980 | || ||| |||| || || |||| || ||||| || ||||| || Sbjct 618396 CCGCCGAGCC---TCGGGAACAGGATAGTAGTTGACGTCAATGACTCGATTCAGATTGAA 618452 Query 78981 CGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCTT--TGATG 79038 | || || || || |||| | || || || || | || | || ||||| Sbjct 618453 GGCAACAACTTTGGTGACATCGTGGAGCTTCTTAAAGTCGAATT--TTCCGTTCGTGATG 618510 Query 79039 AAAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACC 79098 || || || || ||| || || ||||| || ||||| || ||||| ||| || Sbjct 618511 AATGTGGGGAGAGCCAGAGAGGCAAGGTTACAAACGGCGGTTTCGTCAGGGGAGGAGTAT 618570 Query 79099 TCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTT 79154 ||||||||||||||||| | ||| || || |||||||| || | ||||||||| || Sbjct 618571 TCGATGATTTCTGTGCAGAGATTCGAGGATTTGATGGTACCAAGGTTCTTCTGATT 618626 Score = 86.0 bits (94), Expect = 7e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 78199 TAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTCGACAGCTTG 78258 ||||||||||||||||| | ||||||||||| ||||| | |||||| || | || || Sbjct 617607 TAGTACATGCCCGTCTTCAAGCCCTTCTTCCACCCGTAAAAGTGCATGCTGGTCAACTGT 617666 Query 78259 GCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATGTACGCACCG 78318 | ||| |||| || | | ||||| | |||| |||| ||| |||| ||| Sbjct 617667 CCGAGAGTCGGTGCCTGGAGGTGAATGTTCAAGCTCTGGCTCTGGCAAATGAACGCGCCG 617726 Query 78319 CGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTCCGGTAAATG 78378 || ||||| || | |||||| || ||| || |||||||||| ||| ||| || Sbjct 617727 CGATCGGCAGCGAGGTCGATTACTTTCTTCTGACTGATCTCCCAGACGGTTTTGTAGATC 617786 Query 78379 GCCTT 78383 ||||| Sbjct 617787 GCCTT 617791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548522468769600