Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq286 118 1e-21 seq2 109 6e-19 seq308 89.7 6e-13 seq335 84.2 2e-11 >seq286 Length=987428 Score = 118 bits (130), Expect = 1e-21 Identities = 294/442 (67%), Gaps = 7/442 (2%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 ||||| || | ||| || | ||||| ||||| | ||||||||||| | || |||||| Sbjct 832086 CCTTCGTCGCGGCTAATGAGCTCATTGGAAAAAGTCAGGCCAGGCATCAAGCCTCGCTTC 832145 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 |||| ||| ||||||| ||| || || ||||||||||||||| ||| ||||| Sbjct 832146 TTCATCCAGAAGATGGACGCGAAAGAGCCCGAGAAGAAGATGCCTTCAACAGCAGCAAAC 832205 Query 74889 GCGACAAGGCGTTGCGCGAACGGTG--CATCGG-AAGTCATCCAAGTCTGAGCCCATTCA 74945 || || | ||||| | || | || | |||| | ||||| || | ||||| || Sbjct 832206 GCCACCAAGCGTTCACCAAAAGTTGACCGTCGGTCGGAGATCCAGTTCAGTGCCCAGTCT 832265 Query 74946 GCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGG--CTTGCCTTCTCTT 75003 || || || ||||| || | || || | || | ||| ||| || || | || Sbjct 832266 GCCTTGCGCTTGACACACGGAATGGTCTCCACGGCGTCGAAAAGGTACTCGCGT--TCGG 832323 Query 75004 CGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGT 75063 | | ||||||| |||| || | ||| || |||||||| || ||||| ||| Sbjct 832324 CAGCGTCCTTGATATAGGTGTCGATGAGAAGCGAATACGTCTCTGAGTGAATGTTCTCCA 832383 Query 75064 TGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAAT 75123 | | ||| | | |||||| | || ||||| |||| || || || || ||||| Sbjct 832384 TCATGATTTGGAAGCCATAGAAACATCGAGCCTCGGCAACTTGGACCTCGTTGGAAAAGC 832443 Query 75124 TCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTT 75183 | | | | ||||| |||| || || |||||||| ||||| ||||| || || Sbjct 832444 GCTCGACAAGGTTCTCGTTGACAATACCATCCGAGGCTGCGAAGAAAGCGAGGACATGGG 832503 Query 75184 TGATAAAGTGGCGCTCATCGTC 75205 ||| || |||||||| | ||| Sbjct 832504 AGATGAAATGGCGCTCGTTGTC 832525 Score = 109 bits (120), Expect = 6e-19 Identities = 284/425 (67%), Gaps = 15/425 (4%) Strand=Plus/Minus Query 74763 TGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCA 74822 ||| |||| || |||| || || | ||||| ||||| | |||||||||||||| ||| Sbjct 834271 TGCAAGCCCTCGTCTCGACTAATAAGCTCATTGGAAAATGTCAGGCCAGGCATAAGACCA 834212 Query 74823 CGCTTCTTCAACCAAAAGAT---GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACA 74879 || ||||| | ||| || || |||| || || ||| ||||| || ||||| ||| Sbjct 834211 CGTTTCTTGATCCAGAATATTGAGGCA---AACGACCCAGAAAAGAATATCCCTTCCACA 834155 Query 74880 CACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC----ATCCAAGTCTG 74935 |||||||| || || |||| ||| || | || || | ||| ||||| | | Sbjct 834154 GCAGCAAAGGCAACTAGACGTTCCGCAAAGGTTGAAT-GTTTGTCTGAAATCCATTTTAG 834096 Query 74936 AGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGC 74995 |||||| |||||||| || |||| ||| | || || || || | ||| ||| || Sbjct 834095 AGCCCAATCAGCTTTGCGCTTGATGCAAGGAATGGTGTCTATGGCGTCGAAAAGGTGGGC 834036 Query 74996 CTTCTCTTCGGGATCCTTGACG-AGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAA 75054 | ||| | |||||||||| | ||| || || | | || ||||| || ||||| | Sbjct 834035 CCGCTCCTGCGGATCCTTGATGTAGC-CATCGATAAGCAACGAATACGTTTCGGAATGGA 833977 Query 75055 TCGACTCGTTGAACGACTGGTACG-CGTAGAAAGACCGCGCCTCTGCAATCTGTACATCC 75113 | ||| | | || | | | | | ||||| || |||||||| | | ||| || || Sbjct 833976 TATTCTCCAT-CATGATTTGAAAGCCATAGAAGGAACGCGCCTCGGGTACCTGCACTTCA 833918 Query 75114 TTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCC 75173 |||| | | ||| ||||| | || ||||| || ||||| || || ||||| Sbjct 833917 CCACAAAACCTTTCGACGAGGTTCTCGTTTACAATGCCATCTGAGGCCGCAAAGAAAGCA 833858 Query 75174 AGTAC 75178 || || Sbjct 833857 AGAAC 833853 >seq2 Length=2111947 Score = 109 bits (120), Expect = 6e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810 ||||| ||| |||| |||| || ||||| || || | ||||| ||||| | | || Sbjct 203939 GCAAAATCCGTATGCAAGCCCTCGTCTCTACTGATGAGCTCATTGGAAAATGTTAAACCG 203998 Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870 ||||| | ||||| |||||||||||||| ||||| ||| |||||| || || ||| Sbjct 203999 GGCATCAAGCCACGTTTCTTCAACCAAAATATGGCCGCGAAAGAACCAGAAAAAAATATG 204058 Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACG 74910 ||||||||||| ||||| || || ||||| | |||||| Sbjct 204059 CCTTCGACACAGGCAAACGCCACGAGGCGACTCCCGAACG 204098 >seq308 Length=957167 Score = 89.7 bits (98), Expect = 6e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 |||||| ||| ||| || || |||||||| ||||||| | || ||| | || Sbjct 617793 TCAAGGCGATCTACAAAACCGTCTGGGAGATCAGTCAGAAGAAAGTAATCGACCTCGCTG 617734 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 | ||||| || |||| ||| |||| |||| ||||||| | | || || Sbjct 617733 CCGATCGCGGCGCGTTCATTTGCCAGAGCCAGAGCTTGAACATTCACCTCCAGGCACCGA 617674 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 | || | |||||| | |||||||||||||||||||||||||| | |||||||| | Sbjct 617673 CTCTCGGACAGTTGACCAGCATGCACTTTTACGGGTGGAAGAAGGGCTTGAAGACGGGCA 617614 Query 55908 TGTACTATCTGCGGACC 55924 ||||||| || |||||| Sbjct 617613 TGTACTACCTTCGGACC 617597 >seq335 Length=51571 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 |||||||||||||| || | ||| ||||| || | | || |||||||| || || ||| Sbjct 19996 CCTTCATCTCTGCTGATTAGTTCGTTCGAGAAAGTCAAACCTGGCATAAGCCCCCGTTTC 19937 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | |||| ||| || || || || |||||| |||||||||||||| || ||| Sbjct 19936 TTGATCCAATAGACCGCTGCAAACGATCCGGAGAAGAAAATGCCTTCGACACAAGCGAAG 19877 Query 74889 GCGACAAGGCG 74899 || || | ||| Sbjct 19876 GCCACCAAGCG 19866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213674332000