Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1 149 7e-31 seq113 147 2e-30 seq308 114 1e-20 seq69 102 9e-17 seq286 84.2 2e-11 seq284 84.2 2e-11 >seq1 Length=2331425 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| | ||||||||||| || || || || || ||||| Sbjct 482592 ATGCAGATTTTTGTGAAGACATTGACCGGCAAGACGATCACGCTGGAAGTCGAGTCTTCC 482533 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || |||||||| |||||||| |||||||| || ||| Sbjct 482532 GACACCATCGACAATGTCAAGGCAAAGATTCAGGATAAGGAGGGCATTCCTCCCGATCAG 482473 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| |||||||| || || |||||||||||||| | || || || | || || || Sbjct 482472 CAGCGCCTAATTTTCGCCGGCAAGCAACTCGAGGACGGCCGAACTCTTTCTGATTACAAC 482413 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || | || || || ||||| Sbjct 482412 ATCCAGAAGGAGTCAACGCTCCACCTCGTTCTTCGCCTGCGTGGTGG 482366 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | || || ||||| || || | || || ||||| Sbjct 482136 ATGCAAATCTTCGTGAAGACTTTGACGGGAAAGACGATCACGTTGGAAGTCGAGTCTTCG 482077 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| ||||||| || |||||||| |||||||| |||||||| |||||| Sbjct 482076 GATACGATTGACAATGTGAAGGCGAAGATTCAGGATAAGGAGGGCATTCCTCCTGACCAG 482017 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || |||||| | ||||| | ||||| | | || || ||| Sbjct 482016 CAGCGCCTCATCTTTGCCGGGAAGCAATTGGAGGACGGGCGTACTTTGTCGGATTACAAT 481957 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | || ||||| ||| ||||| Sbjct 481956 ATTCAGAAGGAGAGCACCCTTCA 481934 >seq113 Length=2004859 Score = 147 bits (162), Expect = 2e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||||||||| || || ||||| ||||| || ||||| || ||| Sbjct 833527 ATGCAAATTTTCGTCAAGACGCTCACGGGAAAGACCATTACCCTCGAGGTCGAATCATCG 833468 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || ||||||||||||||||| || || || ||||| Sbjct 833467 GACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCAA 833408 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | ||||||||||| ||||| |||||||| | || || || | ||||| || Sbjct 833407 CAGCGCTTGATTTTTGCTGGGAAGCAGCTCGAGGACGGGCGCACTCTTTCGGACTACAAC 833348 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | || ||||| ||||||||| || Sbjct 833347 ATTCAGAAGGAGAGCACTCTTCACCT 833322 Score = 147 bits (162), Expect = 2e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || || ||||||||||| || ||||| ||||| Sbjct 833810 ATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACTATTACCCTCGAGGTCGAGTCGTCC 833751 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | || || || || |||||||||||||| ||||| || |||||| Sbjct 833750 GACACCATCGACAACGTCAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAG 833691 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || || || ||||| |||||||| | || || || | || ||||| Sbjct 833690 CAGCGTTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGGCGCACTCTTTCCGATTATAAC 833631 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | || ||||| || ||||| ||||| Sbjct 833630 ATTCAGAAGGAGTCTACTCTGCATCT 833605 Score = 120 bits (132), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||| || || || || ||||| || || || || || ||||| Sbjct 834093 ATGCAGATTTTCGTCAAAACACTGACGGGAAAGACCATCACCCTGGAAGTCGAGTCCTCG 834034 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || | ||||| || || |||||||||||||| || || || ||||| Sbjct 834033 GATACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAA 833974 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| || || |||| ||| || || | || || || Sbjct 833973 CAGCGCTTGATCTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTCTTTCTGATTACAAC 833914 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | || ||||| ||||||||||| || Sbjct 833913 ATTCAGAAGGAGTCCACTCTTCACCT 833888 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 || || || ||||| |||||||| || ||||| || ||||| ||||| |||| |||||| Sbjct 834216 ATCCCGCCCGACCAACAGCGTCTGATCTTTGCCGGGAAGCAGCTCGAAGATGGGCGTACC 834157 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || ||||||| || | || || || ||||| |||||||| || | ||||||||||| Sbjct 834156 CTCTCAGACTACAACATTCAGAAAGAGTCCACCCTTCATCTTGTGCTCCGTCTTCGCGGC 834097 Query 27631 GG 27632 || Sbjct 834096 GG 834095 >seq308 Length=957167 Score = 114 bits (126), Expect = 1e-20 Identities = 206/299 (69%), Gaps = 4/299 (1%) Strand=Plus/Plus Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774 |||||| |||| ||||| ||||| || ||||| |||| || || |||||| |||| || Sbjct 618336 CATGAAGGCGTCGGCCAGACCCTGCACACCGATTCCGATGGGTCGATGGCGCATGTTTGA 618395 Query 80775 TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT 80834 ||| ||||| |||| || || |||| || ||||| || ||||| ||| | Sbjct 618396 CCGCCGAGCCTCGGGAACAGGATAGTAGTTGACGTCAATGACTCGATTCAGATTGAAGGC 618455 Query 80835 AACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCC--CCTTCACAAAT 80892 |||||| || ||||| || || |||| ||||||||||| |||| | | | ||| Sbjct 618456 AACAACTTTGGTGACATCGTGGAGCTTCTTAAAGTCGAATT--TTCCGTTCGTGATGAAT 618513 Query 80893 GCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCG 80952 | || || ||| || || || || || ||||| || |||| | | ||| Sbjct 618514 GTGGGGAGAGCCAGAGAGGCAAGGTTACAAACGGCGGTTTCGTCAGGGGAGGAGTATTCG 618573 Query 80953 ACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTT 81011 | |||||| ||||| | ||| || || || || ||||| ||||| ||||| || || || Sbjct 618574 ATGATTTCTGTGCAGAGATTCGAGGATTTGATGGTACCAAGGTTCTTCTGATTCGATTT 618632 >seq69 Length=731732 Score = 102 bits (112), Expect = 9e-17 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 || ||||| |||||||||||||| || || || || ||||| || ||||||| ||| ||| Sbjct 268847 ATCCCTCCCGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACC 268788 Query 27571 CT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGG 27629 || ||| ||||| || |||||||||| |||||||| || | ||| | ||||| || || Sbjct 268787 CTCAGC-GACTACAACATCCAAAAGGAGTCCACTCTCCACTTGGTCCTTCGTCTGCGTGG 268729 Query 27630 TGG 27632 ||| Sbjct 268728 TGG 268726 >seq286 Length=987428 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 64717 CGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATT 64776 ||||| | || ||||| ||||||||| || |||||||||||||| || || || Sbjct 834135 CGTCTAGTTGCCTTTGCTGCTGTGGAAGGGATATTCTTTTCTGGGTCGTTTGCCTCAATA 834194 Query 64777 TTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCT 64836 |||||| | || || || || || ||||| || ||| | ||||| || ||||| || | Sbjct 834195 TTCTGGATCAAGAAACGTGGTCTTATGCCTGGCCTGACATTTTCCAATGAGCTTATTAGT 834254 Query 64837 CGGGACGAGGG 64847 || |||||||| Sbjct 834255 CGAGACGAGGG 834265 >seq284 Length=318945 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || |||||||| || || |||||||| ||||| | Sbjct 114243 ATGCAAATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTTGAGGTGGAGTCGTCT 114302 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | || | ||||| ||||| || |||||||| || Sbjct 114303 GACACCATCGACAACGTCAAGGCAAAAATCCAAGACAAGGAAGG 114346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307976180800