Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq113 114 8e-21 seq1 104 1e-17 >seq113 Length=2004859 Score = 114 bits (126), Expect = 8e-21 Identities = 155/212 (73%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 34497 CACCAAA-TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTT 34555 |||||| || |||||| |||||| |||||||| ||||| ||||| || || | |||| Sbjct 833883 CACCAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTT 833942 Query 34556 CAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTG 34615 | || || || ||||| || || || ||||||||||| || || | ||||||||||| Sbjct 833943 CCAGCTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCCT 834002 Query 34616 TGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTT 34674 |||| || | || ||| | ||| || || | ||| ||||||| ||| || || Sbjct 834003 GGATC-TTGGCCTTGACGTTGTCAATGGTATCCGAGGACTCGACTTCCAGGGTGATGGTC 834061 Query 34675 TTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || | ||||| || ||||||||||| Sbjct 834062 TTTCCCGTCAGTGTTTTGACGAAAATCTGCAT 834093 Score = 105 bits (116), Expect = 4e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| ||||| |||||| |||||||||||||| ||||| || ||| |||| || || || Sbjct 833607 ATGCAGAGTAGACTCCTTCTGAATGTTATAATCGGAAAGAGTGCGCCCGTCCTCGAGCTG 833666 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || || || || || |||||||| ||||| || || | ||||||||||| |||| | Sbjct 833667 CTTGCCCGCGAAGATCAAACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATC-T 833725 Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 ||| ||| ||| | || ||||| ||| || || | ||| || || || || | Sbjct 833726 TTGCTTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTAATAGTCTTCCCAG 833785 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 | | || || ||||| |||||||| Sbjct 833786 TGAGGGTCTTGACAAAGATCTGCAT 833810 Score = 100 bits (110), Expect = 2e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || |||||||||||||| |||||||| || || ||||| || ||| |||| || || || Sbjct 833325 TGAAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGCCCGTCCTCGAGCTGC 833384 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 || || ||||| || || ||||||||||| || || | ||||||||||| Sbjct 833385 TTCCCAGCAAAAATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTC 833434 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | ||| | ||| || ||| ||| || |||||||| || ||||| Sbjct 834095 CCGCCGCGAAGACGGAGCACAAGATGAAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAG 834154 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || ||| | ||||| || || || |||||||| || | |||||||||||| ||||| Sbjct 834155 AGGGTACGCCCATCTTCGAGCTGCTTCCCGGCAAAGATCAGACGCTGTTGGTCGGGCGG 834213 >seq1 Length=2331425 Score = 104 bits (114), Expect = 1e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| || |||||| || ||||| ||||| ||||| ||||| |||| || ||||| Sbjct 482390 TGGAGCGTTGACTCCTTCTGGATGTTGTAATCAGAAAGAGTTCGGCCGTCCTCGAGTTGC 482449 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || |||| ||||| || || || || | |||||||| || |||||| Sbjct 482450 TTGCCGGCGAAAATTAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTATCCTGAATCTTT 482509 Query 34624 TGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || || | || ||||| ||| ||||||| || ||||| || ||||| Sbjct 482510 -GCCTTGACATTGTCGATGGTGTCGGAAGACTCGACTTCCAGCGTGATCGTCTTGCCGGT 482568 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 || || ||||||||||||||||| Sbjct 482569 CAATGTCTTCACAAAAATCTGCAT 482592 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 34499 CCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAA 34558 |||| || || ||||||||||| ||||| || ||||| || | || ||| |||| || | Sbjct 481929 CCAAGTGAAGGGTGCTCTCCTTCTGAATATTGTAATCCGACAAAGTACGCCCGTCCTCCA 481988 Query 34559 GTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGA 34618 ||| || |||||||| || | ||||| ||||| || || | |||||||| || ||| Sbjct 481989 ATTGCTTCCCGGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATC-CTGA 482047 Query 34619 TCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTA 34677 || | || || | ||| || || ||| ||||||| || ||||| || Sbjct 482048 ATCTTCGCCTTCACATTGTCAATCGTATCCGAAGACTCGACTTCCAACGTGATCGTCTTT 482107 Query 34678 CCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || ||||| || || ||||| Sbjct 482108 CCCGTCAAAGTCTTCACGAAGATTTGCAT 482136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728295839220