Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq113 122 6e-23 seq1 107 1e-18 >seq113 Length=2004859 Score = 122 bits (134), Expect = 6e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| || |||||||| || ||||| || ||||| || ||| || Sbjct 834093 ATGCAGATTTTCGTCAAAACACTGACGGGAAAGACCATCACCCTGGAAGTCGAGTCCTCG 834034 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || || || ||||| || ||| | || || || ||| Sbjct 834033 GATACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAA 833974 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || || ||||| || || |||||||| | |||||| | ||||||||| Sbjct 833973 CAGCGCTTGATCTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTCTTTCTGATTACAAC 833914 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 833913 ATTCAGAAGGAGTCCAC 833897 Score = 102 bits (112), Expect = 6e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || ||||||||||| || || || ||||| || || || || Sbjct 833527 ATGCAAATTTTCGTCAAGACGCTCACGGGAAAGACCATTACCCTCGAGGTCGAATCATCG 833468 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| | || | || ||| ||||| || ||| | || || || || Sbjct 833467 GACACTATCGACAATGTCAAGGC-GAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCA 833409 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| || || ||||| || || || || || |||| |||||| | || ||||| Sbjct 833408 ACAGCGCTTGATTTTTGCTGGGAAGCAGCTCGAGGACGGGCGCACTCTTTCGGACTACAA 833349 Query 23790 CATACAAAAAGAG 23802 ||| || || ||| Sbjct 833348 CATTCAGAAGGAG 833336 >seq1 Length=2331425 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| || || || || || ||||| |||||||| || ||| | Sbjct 482364 ATGCAGATCTTCGTCAAAACTCTGACAGGCAAGACCATCACCCTCGAAGTCGAATCCTCC 482305 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | || | | || ||||| ||||| ||||| | ||||| |||||| Sbjct 482304 GATACTATCGACAACGTCAAGGCGAAAATCCAAGACAAGGAAGGGATTCCGCCTGATCAA 482245 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||||||||| || || || || | ||||| || || |||||| Sbjct 482244 CAACGTCTCATTTTTGCCGGCAAGCAGCTTGAGGATGGTCGCACCCTATCGGACTACAAC 482185 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 482184 ATCCAGAAGGAGTCGAC 482168 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | || || || |||||||| || ||||| || || | Sbjct 482592 ATGCAGATTTTTGTGAAGACATTGACCGGCAAGACGATCACGCTGGAAGTCGAGTCTTCC 482533 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || |||| | || || || || || | || || ||||| Sbjct 482532 GACACCATCGACAATGTCAAGGCAAAGA-TTCAGGATAAGGAGGGCATTCCTCCCGATCA 482474 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| |||| || |||||||| ||||| || |||| || ||| | |||||||| Sbjct 482473 GCAGCGCCTAATTTTCGCCGGCAAGCAACTCGAGGACGGCCGAACTCTTTCTGATTACAA 482414 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 482413 CATCCAGAAGGAGTCAAC 482396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008199372720