Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq286 199 3e-46 seq2 149 5e-31 seq335 122 7e-23 >seq286 Length=987428 Score = 199 bits (220), Expect = 3e-46 Identities = 377/554 (68%), Gaps = 3/554 (1%) Strand=Plus/Minus Query 4539 AACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAA 4598 ||||||| ||| || ||||| ||||| || ||||||| ||||| || || || ||| Sbjct 834295 AACAATAGACATGCGAAATCGGTGTGCAAGCCCTCGTCTCGACTAATAAGCTCATTGGAA 834236 Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCA 4658 || || | || ||||| | ||| | || || | ||| ||||| | |||||| |||||| Sbjct 834235 AATGTCAGGCCAGGCATAAGACCACGTTTCTTGATCCAGAATATTGAGGCAAACGACCCA 834176 Query 4659 GAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCT 4718 ||||||||||| ||||| || || ||||| || |||| || | | || | | Sbjct 834175 GAAAAGAATATCCCTTCCACAGCAGCAAAGGCAACTAGACGTTCCGCAAAGGTTGAATGT 834116 Query 4719 TTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTAT 4778 |||||| ||||||||||| ||||| | |||||| ||| | ||| ||||| |||| | Sbjct 834115 TTGTCTGAAATCCATTTTAGAGCCCAATCAGCTTTGCGCTTGATGCAAGGAATGGTGTCT 834056 Query 4779 ATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGG 4838 || |||| || | | || || || | || || || || || | Sbjct 834055 ATGGCGTCGAAAAGGTGGGCCCGCTCCTGCGGATCCTTGATGTAGCCATCGATAAGCAAC 833996 Query 4839 CTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCT 4898 |||| |||| ||||| ||||| || || || ||||| || || ||| | | || Sbjct 833995 GAATACGTTTCGGAATGGATATTCTCCATCATGATTTGAAAGCCATAGAAGGAACGCGCC 833936 Query 4899 TCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCA 4958 || | ||| || ||||| |||||| ||||| || | ||| |||||||| || || || Sbjct 833935 TCGGGTACCTGCACTTCACCACAAAACCTTTCGACGAGGTTCTCGTTTACAATGCCATCT 833876 Query 4959 CTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTT- 5017 ||| ||||| || || | |||||| |||||||| ||| | || ||| | || || || Sbjct 833875 GAGGCCGCAAAGAAAGCAAGAACATGCGATATAAAATACCGCTCATCATGGTTGAGATTG 833816 Query 5018 --TTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCT 5075 ||||||| || || | | | |||| ||||||| | ||||| || || ||| Sbjct 833815 AAGTTCCAGTCCACGAAGTCATGGGAAAGGTCAAGTTCTTCAGCTGTCCAGAATGAGGCT 833756 Query 5076 TCCGCTTTTTTGTA 5089 | ||||| ||||| Sbjct 833755 TGAGCTTTCTTGTA 833742 Score = 150 bits (166), Expect = 2e-31 Identities = 358/536 (67%), Gaps = 9/536 (2%) Strand=Plus/Plus Query 4563 TGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCT 4622 |||| |||||||| | |||||| || || || ||||| || | || ||||| || ||| Sbjct 832080 TGCATTCCTTCGTCGCGGCTAATGAGCTCATTGGAAAAAGTCAGGCCAGGCATCAAGCCT 832139 Query 4623 CTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCG 4682 | ||| || | ||| || || | || || || || || ||||| |||||||| || || Sbjct 832140 CGCTTCTTCATCCAGAAGATGGACGCGAAAGAGCCCGAGAAGAAGATGCCTTCAACAGCA 832199 Query 4683 GCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTT--GTCTTTAATCCATTTTAATG 4740 |||||||| || || || || || || || | | ||| ||||| || | || Sbjct 832200 GCAAACGCCACCAAGCGTTCACCAAA--AGTTGACCGTCGGTCGGAGATCCAGTTCAGTG 832257 Query 4741 CCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTT 4800 |||||| || || ||| || |||||||| || | | |||| || || |||| Sbjct 832258 CCCAGTCTGCCTTGCGCTTGACACACGGAATGGTCTCCACGGCGTCGAA-AAGGTACTCG 832316 Query 4801 T-TTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATA 4859 ||| | ||| | ||||| ||||| || || || |||| | || || || || Sbjct 832317 CGTTCGGCAGCGTCCTTGATATAGGTGTCGATGAGAAGCGAATACGTCTCTGAGTGAATG 832376 Query 4860 TTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTA 4919 || || || || || || || || || |||| ||| || | ||||| || ||||| Sbjct 832377 TTCTCCATCATGATTTGGAAGCCATAGAAACATCGAGCCTCGGCAACTTGGACCTCGTTG 832436 Query 4920 CAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAA 4979 |||| | || || | ||| ||||| || ||||| || |||||| || || || | Sbjct 832437 GAAAAGCGCTCGACAAGGTTCTCGTTGACAATACCATCCGAGGCTGCGAAGAAAGCGAGG 832496 Query 4980 ACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTT---TTTTCCAGTGGGGCAAATCT 5036 ||||| || || || | | |||| ||||| || |||||| | | |||| Sbjct 832497 ACATGGGAGATGAAATGGCGCTCGTTGTCGTTAAGGCGGGTTGTCCAGTCATGAATATCT 832556 Query 5037 TTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092 || | | || | ||| || |||||||||||||||| || || || |||||||| Sbjct 832557 TTCGAGAGGTCCATTTCCTCTGCAGTCCAAAACGACGCCTCAGCCTTCTTGTACAT 832612 >seq2 Length=2111947 Score = 149 bits (164), Expect = 5e-31 Identities = 295/437 (68%), Gaps = 0/437 (0%) Strand=Plus/Plus Query 4539 AACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAA 4598 ||||| | ||| |||||||| |||||| || |||||||| || || || || || ||| Sbjct 203927 AACAAAAGACAAGCAAAATCCGTATGCAAGCCCTCGTCTCTACTGATGAGCTCATTGGAA 203986 Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCA 4658 || ||||| |||||||| || || | || || | ||||||||| || || || || ||| Sbjct 203987 AATGTTAAACCGGGCATCAAGCCACGTTTCTTCAACCAAAATATGGCCGCGAAAGAACCA 204046 Query 4659 GAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCT 4718 ||||| ||||||||||| || ||||||||| || | || ||||||||| || Sbjct 204047 GAAAAAAATATGCCTTCGACACAGGCAAACGCCACGAGGCGACTCCCGAACGAAACGGTG 204106 Query 4719 TTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTAT 4778 |||| | |||| |||||||| | || ||||| |||| ||| | ||| | Sbjct 204107 GAATCTTCGACCCATCGCAATGCCCAATCCGCCTTTTTTTTAATGCAGTCCACTGTTTCA 204166 Query 4779 ATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGG 4838 | |||||||| | | || ||| | ||||| || || ||||| || || | Sbjct 204167 AGCGCGTTAAAGAGATGGGCTTGTTCTCGGGTGTCTTTAACGTAGGTGTCGATGAGCAAA 204226 Query 4839 CTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCT 4898 ||| |||| ||||| | ||||| || ||||| || ||||| ||| | | || Sbjct 204227 GAATATGTTTCTGAATGAACGTTTTCGATCATGATCTGGAAACCGTAGAAGGAGCGCGCC 204286 Query 4899 TCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCA 4958 || | ||| ||| | |||| ||| || | |||||||| || || || ||| Sbjct 204287 TCCAGAGGTCCAACCTCGCAAGAAAAGTTTTGAACGAGATTTTCGTTCACGATGCCATCA 204346 Query 4959 CTGGCTGCAAAAAACGC 4975 || |||||||| || Sbjct 204347 GACGCGGCAAAAAAGGC 204363 >seq335 Length=51571 Score = 122 bits (134), Expect = 7e-23 Identities = 370/564 (66%), Gaps = 17/564 (3%) Strand=Plus/Minus Query 4539 AACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAA 4598 ||||||||||| || || || ||| | ||||| |||||||| || |||||||| || Sbjct 20026 AACAATAAACAGGCGAAGTCGGTATGAAGCCCTTCATCTCTGCTGATTAGTTCGTTCGAG 19967 Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCA 4658 || || || || ||||| | || | || || | |||| | | || ||||| || || Sbjct 19966 AAAGTCAAACCTGGCATAAGCCCCCGTTTCTTGATCCAATAGACCGCTGCAAACGATCCG 19907 Query 4659 GAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAA----TCGGGACCCGAACGAGCT 4714 || ||||| |||||||| || || || || || || |||||| || || Sbjct 19906 GAGAAGAAAATGCCTTCGACACAAGCGAAGGCCACCAAGCGCTCGGGA----AAAATGCG 19851 Query 4715 GGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGT 4774 || || ||||||||||||||||| ||| ||||| || || || ||||| || Sbjct 19850 GGTCGGATCGTTAATCCATTTTAATGCACAGCCTGCTTTCCTCCGAATACAAGGAATGGT 19791 Query 4775 GTATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAG 4834 | || ||||| || | | | ||| ||| ||||||| || ||||| | Sbjct 19790 CTCGATGGCGTTGAACAGATAGGTCCGTTCGGCGCTGTCCCGAATATAGGTATCTATCAA 19731 Query 4835 TAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCT 4894 | | ||| ||| || || | ||| || || ||||||| |||||||| | | Sbjct 19730 CAAGGAATATGCTTCGGAGTGAACATTCTCGATCATTGTCTGAAAACCGTAAAAAGAACG 19671 Query 4895 AGCTTCTGTT--ACTTGAACT-TCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTAT 4951 || || | || || || ||| | |||| | ||| | | |||||||| || || Sbjct 19670 GGCCTCCCATGGAC-CGATCTCTCG--AGAAAACCGTTCCAAAAGATTTTCGTTGACGAT 19614 Query 4952 ACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGT-ACTGT--TCGTCAGG 5008 ||||| ||| ||||| || |||| || || || | ||| | |||| |||| | Sbjct 19613 GCCGTCGGAGGCAGCAAAGAATGCCAGCACGTGTGACAAAAAATGCCTGTCATCGTTTGA 19554 Query 5009 CTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAA 5068 | ||| | ||| | | |||||| | | ||||| ||| ||||| |||||||| Sbjct 19553 TAGACGTTGGTCCCAATCCGCCAAATCGGAACGAAGATCAAGTTCGTCAACGGTCCAAAA 19494 Query 5069 CGACGCTTCCGCTTTTTTGTACAT 5092 ||||| |||||||| || ||||| Sbjct 19493 CGACGACTCCGCTTTCTTATACAT 19470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427047830413220