Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2 145 1e-29 seq286 132 7e-26 seq335 107 3e-18 >seq2 Length=2111947 Score = 145 bits (160), Expect = 1e-29 Identities = 303/443 (68%), Gaps = 15/443 (3%) Strand=Plus/Plus Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 |||| | ||| |||||||| ||| | || || |||||||| || | || || ||| Sbjct 203927 AACAAAAGACAAGCAAAATCCGTATGCAAGCCCTCGTCTCTACTGATGAGCTCATTGGAA 203986 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 ||||| | ||||||||| | |||||||| || | ||||||||| ||||||||||| ||| Sbjct 203987 AATGTTAAACCGGGCATCAAGCCACGTTTCTTCAACCAAAATATGGCCGCGAAAGAACCA 204046 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTC-TCTCTC---CGTAAC--TG 48305 ||||| ||||||||||| || ||||| || || | ||| | || ||| || Sbjct 204047 GAAAAAAATATGCCTTCGACACAGGCAAACGCCACGAGGCGACTCCCGAACGAAACGGTG 204106 Query 48306 GCTTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTT 48365 | || | | | ||| || ||||||||| ||||| || || | || || |||| Sbjct 204107 GAATCTTCG---ACCCATCGCAATGCCCAATCCGCCTTTTTTTTAATGCAGTCCACTGTT 204163 Query 48366 TCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTA-- 48423 || | || ||||||||| | || ||| | | ||||||||||| || || || | Sbjct 204164 TCAAGCGCGTTAAAGAGATGGGCTTGTTCTCGGGTGTCTTTAACGTAGGTGTCGATGAGC 204223 Query 48424 AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATC 48483 ||||| ||| |||| || |||| ||||| || ||||| || ||||| || | | Sbjct 204224 AAAGA--ATATGTTTCTGAATGAACGTTTTCGATCATGATCTGGAAACCGTAGAAGGAGC 204281 Query 48484 TCG-CTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATT 48542 || || | | | || ||||| | |||| || | | | ||| || || || || Sbjct 204282 GCGCCTCCAGAGGTC-CAACCTCGCAAGAAAAGTTTTGAACGAGATTTTCGTTCACGATG 204340 Query 48543 CCATCACTAGCAGCAAAAAATGC 48565 |||||| || |||||||| || Sbjct 204341 CCATCAGACGCGGCAAAAAAGGC 204363 >seq286 Length=987428 Score = 132 bits (146), Expect = 7e-26 Identities = 373/568 (66%), Gaps = 10/568 (2%) Strand=Plus/Minus Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 |||| || |||||| ||||| || | || || |||| |||||| | || || ||| Sbjct 834295 AACAATAGACATGCGAAATCGGTGTGCAAGCCCTCGTCTCGACTAATAAGCTCATTGGAA 834236 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 ||||| || || ||||| || |||||||| |||| ||| ||||||| || || || ||| Sbjct 834235 AATGTCAGGCCAGGCATAAGACCACGTTTCTTGATCCAGAATATTGAGGCAAACGACCCA 834176 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCG 48311 ||||||||||| ||||| || || ||||| || || | || | | | | | Sbjct 834175 GAAAAGAATATCCCTTCCACAGCAGCAAAGGCAACTAGACGTTCCGCAAAGGTTGAATGT 834116 Query 48312 TTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCT 48368 |||| | ||||| | | ||||||||||| || ||| | ||||| || || ||| Sbjct 834115 TTGTCTGAAATCCATTTTAGAGCCCAATCAGCTTTGCGCTTGATGCAAGGAATGGTGTCT 834056 Query 48369 ATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTA--AAA 48426 || || | || || | || | ||| || | ||| ||| || | || Sbjct 834055 ATGGCGTCGAAAAGGTGGGCCCGCTCCTGCGGATCCTTGATGTAGCCATCGATAAGCAAC 833996 Query 48427 GACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCG 48486 || |||| ||||||| || ||||| || || || ||||| || || || | | || Sbjct 833995 GA--ATACGTTTCGGAATGGATATTCTCCATCATGATTTGAAAGCCATAGAAGGAACGCG 833938 Query 48487 CTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCAT 48546 | || | | ||| || || |||||| | ||| | | ||||| ||||| || |||| Sbjct 833937 CCTCGGGTACCTGCACTTCACCACAAAACCTTTCGACGAGGTTCTCGTTTACAATGCCAT 833878 Query 48547 CACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGT--TGGAAGTCAG 48604 | || ||||| || || | ||||| |||||||| || | ||| | | Sbjct 833877 CTGAGGCCGCAAAGAAAGCAAGAACATGCGATATAAAATACCGCTCATCATGGTTGAGAT 833818 Query 48605 TTTA-TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATG 48663 | | |||||||| || || | || | || | ||||||||||||||| ||||| | Sbjct 833817 TGAAGTTCCAGTCCACGAAGTCATGGGAAAGGTCAAGTTCTTCAGCTGTCCAGAATGAGG 833758 Query 48664 CCTCTGCTTTTTTATACATATTCCATAT 48691 | | ||||| || || | | |||||| Sbjct 833757 CTTGAGCTTTCTTGTAGAATTGCCATAT 833730 >seq335 Length=51571 Score = 107 bits (118), Expect = 3e-18 Identities = 238/353 (67%), Gaps = 7/353 (2%) Strand=Plus/Minus Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 |||| |||||| || || || |||||| ||||||||||| || |||| |||||| || Sbjct 20026 AACAATAAACAGGCGAAGTCGGTATGAAGCCCTTCATCTCTGCTGATTAGTTCGTTCGAG 19967 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 || || | ||| ||||| || || ||||| |||| |||| | | || || || ||||| Sbjct 19966 AAAGTCAAACCTGGCATAAGCCCCCGTTTCTTGATCCAATAGACCGCTGCAAACGATCCG 19907 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTG-GCTTC 48310 || ||||| |||||||| || || || || | | ||| || || | || Sbjct 19906 GAGAAGAAAATGCCTTCGACACAAGCGAAGGCCACCAAGCGCTCGGGAAAAATGCGGGTC 19847 Query 48311 G--TTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCT 48368 | | || ||||| | ||| || | || ||| || | |||||| || || || Sbjct 19846 GGATCGTTAATCCATTTTAATGCACAGCCTGCTTTCCTCCGAATACAAGGAATGGTCTCG 19787 Query 48369 ATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTA--AAA 48426 || || || || ||| || | ||| ||| || || || |||||||| | || Sbjct 19786 ATGGCGTTGAACAGATAGGTCCGTTCGGCGCTGTCCCGAATATAGGTATCTATCAACAAG 19727 Query 48427 GACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 || ||| | ||||||||||| ||| || || ||||||| ||||||||| Sbjct 19726 GAATATGC--TTCGGAGTGAACATTCTCGATCATTGTCTGAAAACCGTAAAAA 19676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694665847657600