Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq286 145 1e-29 seq2 143 4e-29 seq335 116 5e-21 >seq286 Length=987428 Score = 145 bits (160), Expect = 1e-29 Identities = 378/569 (66%), Gaps = 12/569 (2%) Strand=Plus/Minus Query 46621 AACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680 |||| || |||||| ||||| || | ||| || |||| |||||| | || || ||| Sbjct 834295 AACAATAGACATGCGAAATCGGTGTGCAAGCCCTCGTCTCGACTAATAAGCTCATTGGAA 834236 Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740 ||||| || |||||||| || ||||| || |||| ||| ||||| | || || || ||| Sbjct 834235 AATGTCAGGCCAGGCATAAGACCACGTTTCTTGATCCAGAATATTGAGGCAAACGACCCA 834176 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCA 46800 ||||||||||| ||||| ||||| || || || || || | || | | | | || Sbjct 834175 GAAAAGAATATCCCTTCCACAGCAGCAAAGGCAACTAGACGTTCCGCAAAGGTTGAATGT 834116 Query 46801 TTAT---GAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCT 46857 || | |||||| || ||||||||||||| || ||| | ||||| || || ||| Sbjct 834115 TTGTCTGAAATCCATTTTAGAGCCCAATCAGCTTTGCGCTTGATGCAAGGAATGGTGTCT 834056 Query 46858 ATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTA--AAA 46915 || || | || || | || | ||| || | || ||| || | || Sbjct 834055 ATGGCGTCGAAAAGGTGGGCCCGCTCCTGCGGATCCTTGATGTAGCCATCGATAAGCAAC 833996 Query 46916 GACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTG 46975 || |||| |||| ||||| || || || || || ||||| || || || | | | Sbjct 833995 GA--ATACGTTTCGGAATGGATATTCTCCATCATGATTTGAAAGCCATAGAAGGAACGCG 833938 Query 46976 CTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGAC-AAATTCTCATTCACTATTCCA 47034 | || | | ||| || || |||||| | ||| ||| | ||||| || || || ||| Sbjct 833937 CCTCGGGTACCTGCACTTCACCACAAAACCTTTC-GACGAGGTTCTCGTTTACAATGCCA 833879 Query 47035 TCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATC--GGTAGTCA 47092 || || ||||| || || | ||||| |||||||| ||||| ||| | | Sbjct 833878 TCTGAGGCCGCAAAGAAAGCAAGAACATGCGATATAAAATACCGCTCATCATGGTTGAGA 833819 Query 47093 GTTTA-TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGAC 47151 | | |||||||| || || | || | || | ||||||||||||||||||||| Sbjct 833818 TTGAAGTTCCAGTCCACGAAGTCATGGGAAAGGTCAAGTTCTTCAGCTGTCCAGAATGAG 833759 Query 47152 GCCTCTGCTTTTTTATACATATTCCATAT 47180 || | ||||| || || | | |||||| Sbjct 833758 GCTTGAGCTTTCTTGTAGAATTGCCATAT 833730 >seq2 Length=2111947 Score = 143 bits (158), Expect = 4e-29 Identities = 248/355 (70%), Gaps = 13/355 (4%) Strand=Plus/Plus Query 46621 AACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680 |||| | ||| |||||||| ||| | ||| || |||||||| || | || || ||| Sbjct 203927 AACAAAAGACAAGCAAAATCCGTATGCAAGCCCTCGTCTCTACTGATGAGCTCATTGGAA 203986 Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740 ||||| | || ||||| | ||||| || || | ||||||||| ||||||||||| ||| Sbjct 203987 AATGTTAAACCGGGCATCAAGCCACGTTTCTTCAACCAAAATATGGCCGCGAAAGAACCA 204046 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTC-TCTCTC---CGTAAC--TG 46794 ||||| ||||||||||| ||| || || || || || | ||| | || ||| || Sbjct 204047 GAAAAAAATATGCCTTCGACACAGGCAAACGCCACGAGGCGACTCCCGAACGAAACGGTG 204106 Query 46795 GCATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTT 46854 | ||| | | ||| | |||||||| |||||||| || | || || |||| Sbjct 204107 GAATC---TTCGACCCATCGCAATGCCCAATCCGCCTTTTTTTTAATGCAGTCCACTGTT 204163 Query 46855 TCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTA-- 46912 || | || ||||||||| | || ||| | |||||||| || || || || | Sbjct 204164 TCAAGCGCGTTAAAGAGATGGGCTTGTTCTCGGGTGTCTTTAACGTAGGTGTCGATGAGC 204223 Query 46913 AAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAA 46967 ||||| ||| |||||||||||| |||||| || ||||| || ||||| || Sbjct 204224 AAAGA--ATATGTTTCTGAATGAACGTTTTCGATCATGATCTGGAAACCGTAGAA 204276 >seq335 Length=51571 Score = 116 bits (128), Expect = 5e-21 Identities = 370/566 (65%), Gaps = 12/566 (2%) Strand=Plus/Minus Query 46621 AACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680 |||| |||||| || || || |||||| ||||||||||| || |||| |||||| || Sbjct 20026 AACAATAAACAGGCGAAGTCGGTATGAAGCCCTTCATCTCTGCTGATTAGTTCGTTCGAG 19967 Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740 || || | || ||||| || || || || |||| |||| | | || || || ||||| Sbjct 19966 AAAGTCAAACCTGGCATAAGCCCCCGTTTCTTGATCCAATAGACCGCTGCAAACGATCCG 19907 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTG-GCATC 46799 || ||||| |||||||| ||| ||||| || || | | ||| || || | || Sbjct 19906 GAGAAGAAAATGCCTTCGACACAAGCGAAGGCCACCAAGCGCTCGGGAAAAATGCGGGTC 19847 Query 46800 --ATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCT 46857 || | |||||| || || || | || || || | |||||| || || || Sbjct 19846 GGATCGTTAATCCATTTTAATGCACAGCCTGCTTTCCTCCGAATACAAGGAATGGTCTCG 19787 Query 46858 ATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTA--AAA 46915 || || || || ||| || | ||| | || || || ||| |||||||| | || Sbjct 19786 ATGGCGTTGAACAGATAGGTCCGTTCGGCGCTGTCCCGAATATAGGTATCTATCAACAAG 19727 Query 46916 GACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTG 46975 || ||| | ||| || |||| || || || ||||||| ||||||||| | | | Sbjct 19726 GAATATGC--TTCGGAGTGAACATTCTCGATCATTGTCTGAAAACCGTAAAAAGAACGGG 19669 Query 46976 -CTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCA 47034 || | | | | | |||| | |||| ||||| | | ||| || || || || || Sbjct 19668 CCTCCCATGGACCG-ATCTCTCGAGAAAACCGTTCCAAAAGATTTTCGTTGACGATGCCG 19610 Query 47035 TCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCA-- 47092 || |||||||| ||||||| || ||| | ||||| | |||||| | | | Sbjct 19609 TCGGAGGCAGCAAAGAATGCCAGCACGTGTGACAAAAAATGCCTGTCATCGTTTGATAGA 19550 Query 47093 -GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGAC 47151 ||| | ||| || | ||| | ||| | ||| ||| | ||||| || ||| Sbjct 19549 CGTTGGTCCCAATCCGCCAAATCGGAACGAAGATCAAGTTCGTCAACGGTCCAAAACGAC 19490 Query 47152 GCCTCTGCTTTTTTATACATATTCCA 47177 | ||| ||||| |||||||| | ||| Sbjct 19489 GACTCCGCTTTCTTATACATCTGCCA 19464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712931370028800