Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq113 114 3e-20 seq1 107 4e-18 >seq113 Length=2004859 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 151899 AGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGG 151958 ||||| ||||||||||| || || ||||| ||||||| | ||| | ||| || || || Sbjct 833605 AGATGCAGAGTAGACTCCTTCTGAATGTTATAATCGGAAAGAGTGCGCCCGTCCTCGAGC 833664 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 || || |||||||| | | ||||||||| | | || || ||||| || || || Sbjct 833665 TGCTTGCCCGCGAAGATCAAACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATC 833724 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 ||| |||||| | || | | |||| || ||| || || || |||||||| || || Sbjct 833725 TTTGCTTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTAATAGTCTTCCCA 833784 Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| || |||| |||||| Sbjct 833785 GTGAGGGTCTTGACAAAGATCTGCAT 833810 Score = 104 bits (114), Expect = 5e-17 Identities = 150/210 (71%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| ||||| || || ||||||||||| | | ||| | |||||||| | Sbjct 833886 CAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTCCA 833945 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| ||||||||||| | | ||| ||||| | | ||| || ||||| || || Sbjct 833946 GCTGCTTT--CCGGCGAAGATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCCTG 834003 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || ||||| | || | | | || || ||| ||||| || || || || || Sbjct 834004 GATCTTGGCCTTGACGTTGTCAATGGTATCCGAGGACTCGACTTCCAGGGTGATGGTCTT 834063 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || ||||| | |||||| Sbjct 834064 TCCCGTCAGTGTTTTGACGAAAATCTGCAT 834093 >seq1 Length=2331425 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || |||||||||||||| | | ||||| || || Sbjct 482381 AGAACGAGGTGGAGCGTTGACTCCTTCTGGATGTTGTAATCAGAAAGAGTTCGGCCGTCC 482440 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || |||||||| || || | |||||| || | | || || ||||| || Sbjct 482441 TCGAGTTGCTTGCCGGCGAAAATTAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTATCC 482500 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||| |||||| | || | | |||| ||| ||| ||||| || || || || Sbjct 482501 TGAATCTTTGCCTTGACATTGTCGATGGTGTCGGAAGACTCGACTTCCAGCGTGATCGTC 482560 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | |||||||| || | |||||| Sbjct 482561 TTGCCGGTCAATGTCTTCACAAAAATCTGCAT 482592 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||| || || || |||||||| | ||||| | ||| || || | Sbjct 481930 CAAG-TGAAGGGTGCTCTCCTTCTGAATATTGTAATCCGACAAAGTACGCCCGTCCTCCA 481988 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 |||||||| ||||| || | ||||||||| | | || || ||||| || |||| Sbjct 481989 ATTGCTTCCCGGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTGAA 482048 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| | || | | || ||| ||| ||||| | || || || || | Sbjct 482049 TCTTCGCCTTCACATTGTCAATCGTATCCGAAGACTCGACTTCCAACGTGATCGTCTTTC 482108 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| | |||||||||||||| ||||| Sbjct 482109 CCGTCAAAGTCTTCACGAAGATTTGCAT 482136 Score = 87.8 bits (96), Expect = 4e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || || || || ||||| || ||||||||||| || | || || | ||||| Sbjct 482152 GAGAACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGATAGGGTGCGACCATC 482211 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||| || || || | || || || | || || |||||||| || Sbjct 482212 CTCAAGCTGCTTGCCGGCAAAAATGAGACGTTGTTGATCAGGCGGAATCCCTTCCTTGTC 482271 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| ||||| ||||| | || | | || || || ||||| || || || || Sbjct 482272 TTGGATTTTCGCCTTGACGTTGTCGATAGTATCGGAGGATTCGACTTCGAGGGTGATGGT 482331 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || ||||| || ||||||| |||||| Sbjct 482332 CTTGCCTGTCAGAGTTTTGACGAAGATCTGCAT 482364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153815773668140