Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1 199 8e-46 seq113 172 1e-37 seq286 109 1e-18 seq69 93.3 9e-14 seq284 89.7 1e-12 >seq1 Length=2331425 Score = 199 bits (220), Expect = 8e-46 Identities = 181/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| |||||||| || ||||| || | ||| || || |||||||||||||| | Sbjct 482137 ACCACCGCGCAGGCGGAGAACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 482196 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| |||||||| || || || |||||||| || | ||||||||| ||| ||| Sbjct 482197 TAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCAAAAATGAGACGTTGTTGATCAGGCGG 482256 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||||||||| || || || ||| | |||||||| || || | |||||| Sbjct 482257 AATCCCTTCCTTGTCTTGGATTTTCGCCTTGACGTTGTCGATAGTATCGGAGGATTCGAC 482316 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||| ||||| ||||| || |||| ||| || ||||| |||||||| Sbjct 482317 TTCGAGGGTGATGGTCTTGCCTGTCAGAGTTTTGACGAAGATCTGCAT 482364 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||||||||| || || || | ||| || || ||||||||||| |||| | Sbjct 482366 CCACCACGCAGGCGAAGAACGAGGTGGAGCGTTGACTCCTTCTGGATGTTGTAATCAGAA 482425 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| ||||| || ||||| || || | || || || || ||| Sbjct 482426 AGAGTTCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATTAGGCGCTGCTGATCGGGAGGA 482485 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| || || |||||||| || || | ||||| ||||| |||| |||||| Sbjct 482486 ATGCCCTCCTTATCCTGAATCTTTGCCTTGACATTGTCGATGGTGTCGGAAGACTCGACT 482545 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| || ||||| ||||| || || |||||||| Sbjct 482546 TCCAGCGTGATCGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCAT 482592 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 282903 GTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCG 282962 ||||| || || || || ||||| || | | || || || ||||| | ||| |||||| Sbjct 481940 GTGCTCTCCTTCTGAATATTGTAATCCGACAAAGTACGCCCGTCCTCCAATTGCTTCCCG 481999 Query 282963 GCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTT 283022 |||||||| | || || |||||| ||||| |||||||| || || ||||| || || Sbjct 482000 GCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTGAATCTTCGCCTTC 482059 Query 283023 ACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTC 283082 || | || || || ||||||| |||||||| | ||||||||||| |||||||||||| Sbjct 482060 ACATTGTCAATCGTATCCGAAGACTCGACTTCCAACGTGATCGTCTTTCCCGTCAAAGTC 482119 Query 283083 TTAACGAATATCTGCAT 283099 || ||||| || ||||| Sbjct 482120 TTCACGAAGATTTGCAT 482136 Score = 102 bits (112), Expect = 2e-16 Identities = 90/111 (81%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 282993 ATACCCT-CCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||| |||||||||||||||| || || ||| | ||||| || || || | |||||| Sbjct 483049 ATACCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCGATGGTATCAGAGGATTCGAC 483108 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||||||||| ||||| || || | ||||| ||||| |||||||| || Sbjct 483109 CTCGAGAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATCTGCATGTT 483159 Score = 84.2 bits (92), Expect = 5e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || ||||| || || || | ||| || || |||||||||||||| | Sbjct 482593 ACCACCGCGGAGACGAAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 482652 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 ||| ||||| |||||||| || || || || || ||||| | ||||||||||| Sbjct 482653 AAGAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATAAGGCGTTGTTGGTC 482706 >seq113 Length=2004859 Score = 172 bits (190), Expect = 1e-37 Identities = 163/208 (78%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 282892 CCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTA 282951 |||| || | ||||| || || || ||||||||||| | ||| ||||| || ||||| | Sbjct 833320 CCAGGTGAAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGCCCGTCCTCGA 833379 Query 282952 GTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGA 283011 | || ||||| ||||| ||||| || ||||||||| || |||||||||||||| || | Sbjct 833380 GCTGCTTCCCAGCAAAAATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCCTGAA 833439 Query 283012 TCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTAC 283071 |||| || || || | |||||||||||||| | |||||| ||||| || || ||||| | Sbjct 833440 TCTTCGCCTTGACATTGTCGATAGTGTCCGATGATTCGACCTCGAGGGTAATGGTCTTTC 833499 Query 283072 CCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| | ||||| ||||| || ||||| Sbjct 833500 CCGTGAGCGTCTTGACGAAAATTTGCAT 833527 Score = 165 bits (182), Expect = 2e-35 Identities = 151/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || |||||||| |||| ||| ||||| ||||| || || || || ||||| ||| Sbjct 833903 TCCTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAG 833962 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| || ||||||||| || |||||||||||||| |||||||| || || ||| | Sbjct 833963 ATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 834022 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || || ||||| | |||||||| || ||||| ||||| ||||||| || || ||| Sbjct 834023 TCAATGGTATCCGAGGACTCGACTTCCAGGGTGATGGTCTTTCCCGTCAGTGTTTTGACG 834082 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 834083 AAAATCTGCAT 834093 Score = 156 bits (172), Expect = 9e-33 Identities = 149/191 (78%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || ||||| || || | ||| ||||| || ||||| || || || || || ||| Sbjct 833620 TCCTTCTGAATGTTATAATCGGAAAGAGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAAG 833679 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||||||| || |||||| ||||||||||||||||| |||||||||||||| ||| | Sbjct 833680 ATCAAACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTTGCTTTGACGTTG 833739 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || | ||||| ||||| || || ||||| || || | ||||| || Sbjct 833740 TCGATGGTGTCGGACGACTCGACCTCGAGGGTAATAGTCTTCCCAGTGAGGGTCTTGACA 833799 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 833800 AAGATCTGCAT 833810 Score = 107 bits (118), Expect = 4e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| ||||| || | ||||| || || || | |||||| || Sbjct 834269 CCCTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTATCGGAGGATTCGACCTCA 834328 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| ||||| || ||||||||||| ||||| |||||||| Sbjct 834329 AGAGTGATGGTCTTTCCTGTCAAAGTCTTCACGAAAATCTGCAT 834372 Score = 84.2 bits (92), Expect = 5e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || || || || || ||||| | ||| ||||| || ||||||||||| | Sbjct 834094 ACCGCCGCGAAGACGGAGCACAAGATGAAGGGTGGACTCTTTCTGAATGTTGTAGTCTGA 834153 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 || || || ||||| || || || |||||||||||||||| ||| |||||||| Sbjct 834154 GAGGGTACGCCCATCTTCGAGCTGCTTCCCGGCAAAGATCAGACGCTGTTGGTC 834207 >seq286 Length=987428 Score = 109 bits (120), Expect = 1e-18 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || || |||||||||||||| | ||| | ||||| || ||||| || || || ||| | Sbjct 831897 CTCATTGGCATGAATGCTGACTTGATGTGTCAATACATTGAATTTGTTGCCGACCGTCTC 831838 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 |||| || || || | || || |||||||||| | ||||| |||| || ||||| Sbjct 831837 CTCGTTGCCCTCGGAAATGACAAGTTGTATAACTCGACAAACCCATTCGACTTCATGGAC 831778 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTC 230387 | || ||||| ||||| || || ||||||||||| ||||| ||| Sbjct 831777 ATGATCTCACTGCAGGGCAAGACAAACTTCTTCGAGAAGCGCGTC 831733 >seq69 Length=731732 Score = 93.3 bits (102), Expect = 9e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| ||||| |||| || | ||| || ||||||||||||||||| Sbjct 268725 ACCACCACGCAGACGAAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGCT 268784 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 || ||||| |||||||| || || || ||||| ||||||| ||| || ||||| Sbjct 268785 GAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 268838 >seq284 Length=318945 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 || |||||||||||||| ||||| || ||| | ||||| ||||| || | || || || Sbjct 114346 CCTTCCTTGTCTTGGATTTTTGCCTTGACGTTGTCGATGGTGTCAGACGACTCCACCTCA 114287 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || ||||||||||| ||||| | ||||| ||||| || ||||| || Sbjct 114286 AGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCATCTT 114240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046734640142360