Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2 127 2e-24 seq335 104 2e-17 >seq2 Length=2111947 Score = 127 bits (140), Expect = 2e-24 Identities = 296/444 (67%), Gaps = 2/444 (0%) Strand=Plus/Plus Query 23500 AACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAA 23559 ||||| | ||| |||||||| ||| | ||| || || ||||| || | ||||| ||| Sbjct 203927 AACAAAAGACAAGCAAAATCCGTATGCAAGCCCTCGTCTCTACTGATGAGCTCATTGGAA 203986 Query 23560 AATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCG 23619 |||||||| || ||||| || || ||||| || | ||||||||| || || || || || Sbjct 203987 AATGTTAAACCGGGCATCAAGCCACGTTTCTTCAACCAAAATATGGCCGCGAAAGAACCA 204046 Query 23620 GAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTA 23679 ||||| || || || || ||| ||||| ||||| || || | || || | | | Sbjct 204047 GAAAAAAATATGCCTTCGACACAGGCAAACGCCACGAGGCGACTCCCGAACGAAACGGTG 204106 Query 23680 TAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCA 23739 |||| | |||| || ||||| ||||| ||| | || || | ||||||| Sbjct 204107 GAATCTTCGACCCATCGCAATGCCCAATCCGCCTTTTTTTTAATGCAGTCCACTGTTTCA 204166 Query 23740 ATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAA 23799 | || || |||||| | || |||| | ||| | | || || || || || ||| Sbjct 204167 AGCGCGTTAAAGAGATGGGCTTGTTCTCGGGTGTCTTTAACGTAGGTGTCGATGAGCAAA 204226 Query 23800 CTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAG-C 23858 ||| |||| ||||||| ||||| || ||||| || || || || | | | | Sbjct 204227 GAATATGTTTCTGAATGAACGTTTTCGATCATGATCTGGAAACCGTAGAAGGAGCGCGCC 204286 Query 23859 TTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATC 23918 | |||| | ||| || | |||| ||| | | | ||||||||| || || ||||| Sbjct 204287 TCCAGA-GGTCCAACCTCGCAAGAAAAGTTTTGAACGAGATTTTCGTTCACGATGCCATC 204345 Query 23919 ACTAGCAGCAAAGAAAGCAAGAAC 23942 | || ||||| || || || || Sbjct 204346 AGACGCGGCAAAAAAGGCGAGGAC 204369 >seq335 Length=51571 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 23500 AACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAA 23559 ||||||||||| || || || ||| || |||||||| || || || | ||| || || Sbjct 20026 AACAATAAACAGGCGAAGTCGGTATGAAGCCCTTCATCTCTGCTGATTAGTTCGTTCGAG 19967 Query 23560 AATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCG 23619 || || || |||||||| | || ||||| || |||||| | | || ||||| |||||| Sbjct 19966 AAAGTCAAACCTGGCATAAGCCCCCGTTTCTTGATCCAATAGACCGCTGCAAACGATCCG 19907 Query 23620 GAAAAGAAAATACCCTCAACAGCCGCAAAGGCCAC 23654 || |||||||| || || ||| || |||||||| Sbjct 19906 GAGAAGAAAATGCCTTCGACACAAGCGAAGGCCAC 19872 Score = 84.2 bits (92), Expect = 2e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 23217 TTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATT 23276 |||||| ||||| ||||| ||| | ||||||||||| ||||||||||||| ||| || | Sbjct 20354 TTTTTG-TATTCGCCAACTCGTTTCTCGAAAAAATTCGTCTTACCCTCTAGTGAAATCAT 20296 Query 23277 TTCCATAAAATCAAATGGATT 23297 ||||| |||||||| ||||| Sbjct 20295 ATCCATGAAATCAAAGGGATT 20275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521485783676000