Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq113 154 4e-32 seq1 134 3e-26 seq284 87.8 4e-12 >seq113 Length=2004859 Score = 154 bits (170), Expect = 4e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || || ||||||||||| || || ||| Sbjct 833807 CAGATCTTTGTCAAGACCCTCACTGGGAAGACTATTACCCTCGAGGTCGAGTCGTCCGAC 833748 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||||||| |||||| |||||||| || || || || || |||||||| Sbjct 833747 ACCATCGACAACGTCAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAGCAG 833688 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || |||||||| || || | |||||| ||||||||||| | Sbjct 833687 CGTTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGGCGCACTCTTTCCGATTATAACATT 833628 Query 178104 CAAAAAGAATCAACACTGCATCT 178126 || || || || || |||||||| Sbjct 833627 CAGAAGGAGTCTACTCTGCATCT 833605 Score = 149 bits (164), Expect = 2e-30 Identities = 156/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| || || ||||| || |||||||| || || || ||| || Sbjct 834090 CAGATTTTCGTCAAAACACTGACGGGAAAGACCATCACCCTGGAAGTCGAGTCCTCGGAT 834031 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| |||||||| || || ||||| || ||||| || Sbjct 834030 ACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAACAG 833971 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| ||||| |||||||| | |||||| | ||||| ||| | Sbjct 833970 CGCTTGATCTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTCTTTCTGATTACAACATT 833911 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 833910 CAGAAGGAGTCCACTCTTCACCTTG 833886 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| ||||| || || ||||||||||| ||| || ||| Sbjct 833524 CAAATTTTCGTCAAGACGCTCACGGGAAAGACCATTACCCTCGAGGTCGAATCATCGGAC 833465 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||||||||| || || ||||| || ||||| || Sbjct 833464 ACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCAACAG 833405 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || || |||||||| || || | |||||| | || || ||| | Sbjct 833404 CGCTTGATTTTTGCTGGGAAGCAGCTCGAGGACGGGCGCACTCTTTCGGACTACAACATT 833345 Query 178104 CAAAAAGA 178111 || || || Sbjct 833344 CAGAAGGA 833337 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| ||| | |||||||| || ||||| || ||||| ||| ||| || Sbjct 834369 CAGATTTTCGTGAAGACTTTGACAGGAAAGACCATCACTCTTGAGGTCGAATCCTCCGAT 834310 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| || |||||| ||||| |||||||| || || Sbjct 834309 ACCATCGACAATGTCAAAGCCAAGATCCAGGACAAGGAGGG 834269 >seq1 Length=2331425 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || | || || || |||||||| || || || || || ||| Sbjct 482589 CAGATTTTTGTGAAGACATTGACCGGCAAGACGATCACGCTGGAAGTCGAGTCTTCCGAC 482530 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| |||||||||||| || || || || ||||| || ||||| Sbjct 482529 ACCATCGACAATGTCAAGGCAAAGATTCAGGATAAGGAGGGCATTCCTCCCGATCAGCAG 482470 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || || ||||| || || | |||||| | ||||| ||| || Sbjct 482469 CGCCTAATTTTCGCCGGCAAGCAACTCGAGGACGGCCGAACTCTTTCTGATTACAACATC 482410 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || ||||| || || || ||| Sbjct 482409 CAGAAGGAGTCAACGCTCCACCTCGTT 482383 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| |||||||| ||||| || || ||||||||||| || ||| ||| || Sbjct 482361 CAGATCTTCGTCAAAACTCTGACAGGCAAGACCATCACCCTCGAAGTCGAATCCTCCGAT 482302 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| || || || ||||| ||||| || || || || || ||| Sbjct 482301 ACTATCGACAACGTCAAGGCGAAAATCCAAGACAAGGAAGGGATTCCGCCTGATCAACAA 482242 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || ||||| || ||||| || ||||| | || || | || || ||| || Sbjct 482241 CGTCTCATTTTTGCCGGCAAGCAGCTTGAGGATGGTCGCACCCTATCGGACTACAACATC 482182 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || || || ||| Sbjct 482181 CAGAAGGAGTCGACGCTCCACCTGGTT 482155 Score = 96.9 bits (106), Expect = 8e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 178024 GAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGA 178083 |||||||||| ||||| ||||| ||||||||||| ||||| ||||| || ||||| | | Sbjct 482717 GAATCCCTCCCGACCAACAACGCCTTATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCA 482658 Query 178084 CTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||| |||| || ||| |||| || || || || || || ||||| Sbjct 482657 CTCTTTCCGACTACAACATCCAGAAGGAGTCCACCCTTCACCTTGT 482612 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 178026 ATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACT 178085 ||||| || ||||||||||| ||||||||||||||||| |||||||| || ||| | || Sbjct 482999 ATCCCGCCCGACCAGCAACGTCTTATCTTCGCCGGAAAGCAGCTCGAGGACGGACGAACC 482940 Query 178086 CTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || | || |||||| | || || || || || || || ||||| Sbjct 482939 CTATCTGACTATAACATTCAGAAGGAGTCGACCCTTCACCTTGT 482896 Score = 87.8 bits (96), Expect = 4e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| ||| | || ||||| |||||||| | || || || || || Sbjct 482133 CAAATCTTCGTGAAGACTTTGACGGGAAAGACGATCACGTTGGAAGTCGAGTCTTCGGAT 482074 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||||||||| || || || || ||||| |||||||| Sbjct 482073 ACGATTGACAATGTGAAGGCGAAGATTCAGGATAAGGAGGGCATTCCTCCTGACCAGCAG 482014 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAA 178099 || || ||||| ||||| || || | || || || | ||| | | ||||| || Sbjct 482013 CGCCTCATCTTTGCCGGGAAGCAATTGGAGGACGGGCGTACTTTGTCGGATTACAA 481958 >seq284 Length=318945 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || ||||||||||| |||||||| || ||| Sbjct 114246 CAAATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTTGAGGTGGAGTCGTCTGAC 114305 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| |||||||| ||| || || ||||| ||||| Sbjct 114306 ACCATCGACAACGTCAAGGCAAAAATCCAAGACAAGGAAGG 114346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203725956245960