Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq113 156 4e-33 seq1 131 2e-25 seq284 93.3 4e-14 seq69 91.5 1e-13 >seq113 Length=2004859 Score = 156 bits (172), Expect = 4e-33 Identities = 164/212 (77%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 41653 CACC-AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711 |||| |||||||| || |||||||||||||||||| ||||| || |||||| |||| | Sbjct 833600 CACCGAGATGCAGAGTAGACTCCTTCTGAATGTTATAATCGGAAAGAGTGCGCCCGTCCT 833659 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771 ||||||||||||| ||||| |||| ||||| ||||| | ||||| | |||||||||| Sbjct 833660 CGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCC- 833718 Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 || | ||||||| ||| | | | |||||| |||||| ||||| | || || || Sbjct 833719 TGGATCTTTGCTTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTAATAGTC 833778 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| || || |||||||| Sbjct 833779 TTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 833810 Score = 149 bits (164), Expect = 6e-31 Identities = 160/209 (77%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 41655 CCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGA 41714 |||| || || |||||||||||||||||||| ||||| || || |||||| |||| |||| Sbjct 833320 CCAGGTGAAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGCCCGTCCTCGA 833379 Query 41715 GCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGA 41774 ||||||| || || || |||| |||||||||||| | ||| | | |||||||||| ||| Sbjct 833380 GCTGCTTCCCAGCAAAAATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCC-TGA 833438 Query 41775 TTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 | || || | || | | | |||||| || || ||||| | || || || || Sbjct 833439 ATCTTCGCCTTGACATTGTCGATAGTGTCCGATGATTCGACCTCGAGGGTAATGGTCTTT 833498 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| |||||||| |||||||| ||||| Sbjct 833499 CCCGTGAGCGTCTTGACGAAAATTTGCAT 833527 Score = 123 bits (136), Expect = 2e-23 Identities = 157/212 (74%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 41653 CACCA-GATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711 ||||| | || || ||| ||||||||||||||| || || || || ||||| | || | Sbjct 833883 CACCAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTT 833942 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771 | |||||||| |||||||| |||| |||||||||||| | ||| | | |||||||||| Sbjct 833943 CCAGCTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCC- 834001 Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 || | || || | ||| | | | || || ||||| || |||| || || || Sbjct 834002 TGGATCTTGGCCTTGACGTTGTCAATGGTATCCGAGGACTCGACTTCCAGGGTGATGGTC 834061 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||||||| || || |||||||||||||| Sbjct 834062 TTTCCCGTCAGTGTTTTGACGAAAATCTGCAT 834093 Score = 120 bits (132), Expect = 3e-22 Identities = 100/121 (83%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| ||||| | ||| ||||| || ||| ||| ||||||||||| ||||| ||| Sbjct 834095 CCGCCGCGAAGACGGAGCACAAGATGAAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAG 834154 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754 ||||| ||| | || ||||||||||| ||||| || ||||| ||||||||||| ||||| Sbjct 834155 AGGGTACGCCCATCTTCGAGCTGCTTCCCGGCAAAGATCAGACGCTGTTGGTCGGGCGGG 834214 Query 41755 A 41755 | Sbjct 834215 A 834215 >seq1 Length=2331425 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | || || || ||||| ||||||||| ||||| || || || Sbjct 482365 GCCACCACGCAGGCGAAGAACGAGGTGGAGCGTTGACTCCTTCTGGATGTTGTAATCAGA 482424 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| ||||| |||||||||||||| || |||||||| || || | || Sbjct 482425 AAGAGTTCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATTAGGCGCTGCTGATCGGGAGG 482484 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||| ||| ||| | ||||| | || | | | |||||| ||||| | Sbjct 482485 AATGCCCTCCTTATCC-TGAATCTTTGCCTTGACATTGTCGATGGTGTCGGAAGACTCGA 482543 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| ||| ||||| || || |||| ||||| || ||||||||||| Sbjct 482544 CTTCCAGCGTGATCGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCAT 482592 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||||| || ||||| ||||||||| ||||| ||||| || Sbjct 482138 CCACCGCGCAGGCGGAGAACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAT 482197 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||||||||| || || || || ||||| || | ||| Sbjct 482198 AGGGTGCGACCATCCTCAAGCTGCTTGCCGGCAAAAATGAGACGTTGTTGATCAGGCGGA 482257 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||| | || |||| || | ||| | | | ||| ||| || || || Sbjct 482258 ATCCCTTCCTTGT-CTTGGATTTTCGCCTTGACGTTGTCGATAGTATCGGAGGATTCGAC 482316 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || || || || ||||| || || ||||| ||||||||| Sbjct 482317 TTCGAGGGTGATGGTCTTGCCTGTCAGAGTTTTGACGAAGATCTGCATG 482365 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 41660 TGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGC 41719 || || ||||||||||||||||| || || || || | || ||| |||| || | ||| Sbjct 481934 TGAAGGGTGCTCTCCTTCTGAATATTGTAATCCGACAAAGTACGCCCGTCCTCCAATTGC 481993 Query 41720 TTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTT 41779 || ||||| || || |||||||| ||||| | |||| || |||||| ||| ||| | || Sbjct 481994 TTCCCGGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCC-TGAATCTT 482052 Query 41780 TGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGT 41838 || | || | | | || || ||||| || |||| ||| ||||| || ||||| Sbjct 482053 CGCCTTCACATTGTCAATCGTATCCGAAGACTCGACTTCCAACGTGATCGTCTTTCCCGT 482112 Query 41839 CAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| || ||||| Sbjct 482113 CAAAGTCTTCACGAAGATTTGCAT 482136 Score = 100 bits (110), Expect = 3e-16 Identities = 96/122 (79%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | || || || || || ||||||||||||||||||||| || Sbjct 482877 GCCGCCACGCAGACGCAGGACAAGGTGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGA 482936 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGG 41753 ||||| || |||| ||||||||||| |||||||| || || || || ||||| |||| Sbjct 482937 TAGGGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGACGTTGCTGGTCGGGCGG 482996 Query 41754 GA 41755 || Sbjct 482997 GA 482998 >seq284 Length=318945 Score = 93.3 bits (102), Expect = 4e-14 Identities = 73/86 (85%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| |||||| ||| ||||| |||| |||||||||||||| || || Sbjct 114493 CTCCTTCTGGATGTTGTAGTCGCTGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAA 114434 Query 41731 TATCAGGCGCTGTTGGTC-CGCGGGA 41755 ||||||||||||||||| |||||| Sbjct 114433 GATCAGGCGCTGTTGGTCGGGCGGGA 114408 >seq69 Length=731732 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| |||||| || ||||| |||||| | Sbjct 268726 CCACCACGCAGACGAAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGCTG 268785 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 |||||||| | || || ||||||||||||||||| ||||| ||||| ||||| Sbjct 268786 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 268838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302035208000