Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11]
10,694 sequences; 59,384,214 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq32 179 4e-40
seq925 145 8e-30
seq179 134 1e-26
seq247 100 3e-16
>seq32
Length=1481398
Score = 179 bits (198), Expect = 4e-40
Identities = 291/419 (69%), Gaps = 0/419 (0%)
Strand=Plus/Minus
Query 16955 AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAA 17014
|||| ||||||||||||||| || || |||||||||| || ||||| || || |||
Sbjct 1084277 AACAATAGACATGCGAAATCGGTGTGCAAGCCCTCGTCTCGACTAATAAGCTCATTGGAA 1084218
Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074
||||||| || ||||| || |||||||| | ||| ||||| | ||| |||||||||
Sbjct 1084217 AATGTCAGGCCAGGCATAAGACCACGTTTCTTGATCCAGAATATTGAGGCAAACGACCCA 1084158
Query 17075 GAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCT 17134
||||||||||| || ||||| | ||||| || | || ||||| ||| | || | | |
Sbjct 1084157 GAAAAGAATATCCCTTCGACAGCAGCAAAGGCAACTAGACGTTCCGCGAAGGTTGAATGT 1084098
Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194
|||| ||||||||| | |||| || ||||| |||| |||||| || || |||
Sbjct 1084097 TTGTCTGAAATCCATTTTAGAGCCCAATCAGCTTTGCGCTTGATGCAAGGAATGGTGTCT 1084038
Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254
||||| | || | | | ||||| | || | || || |||||| || |
Sbjct 1084037 ATGGCGTCGAAAAGGTGGGCCCGCTCCTGCGGATCCTTGATGTAGCCATCGATAAGCAAC 1083978
Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314
||| ||||||| || || |||||||| || ||||| || || ||| | || ||
Sbjct 1083977 GAATACGTTTCGGAATGGATATTCTCCATCATGATTTGAAAGCCATAGAAGGAACGCGCC 1083918
Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTC 17373
|| | || || ||||| | | || | ||| | || || ||||| || ||||| ||
Sbjct 1083917 TCGGGTACCTGCACTTCACCACAAAACCTTTCGACGAGGTTCTCGTTTACAATGCCATC 1083859
>seq925
Length=43645
Score = 145 bits (160), Expect = 8e-30
Identities = 249/359 (69%), Gaps = 2/359 (1%)
Strand=Plus/Plus
Query 16960 CAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGT 17019
|| ||| |||||||| || | ||||| |||| ||||||||| ||||| | || |
Sbjct 13681 CATACACGCGAAATCTGTGTGAAGACCCTCATCTCGGCTGATAAGCTCGTTTGCGAACGA 13740
Query 17020 CAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAA 17079
| || |||||| || | |||||| |||||||| ||||||||||| || || |||||
Sbjct 13741 TAGTCCTGGCATCAAACCCCTTTTCTTCAACCAAAAGATCGCGGCGAATGAGCCGGAAAA 13800
Query 17080 GAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTT 17139
||| || || || ||| |||| || || | |||||||| || |||| || | ||
Sbjct 13801 GAAAATCCCTTCTACGCATGCGAAAGCCAACAATCGTTCACCGAACGTTCTTTCCTCGTC 13860
Query 17140 ACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC 17199
| ||||| || |||| || ||||||| ||| | |||| || ||||| || ||
Sbjct 13861 AGTTATCCAAGTCAAAGCCCAATCTGCTTTTTTCTTCACGCAAGGAATTGTTTCCATCGC 13920
Query 17200 CTTAAATAATTTCTCTT-TTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGT 17258
|| ||| | ||| ||| |||| | ||| | ||||| | ||||| | || |
Sbjct 13921 ATTGAAT-AGTTCGCTTCTTTCGTTGTCGTCCTTGATATAACTGTCGATCAAAAGCGAAT 13979
Query 17259 ACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCC 17317
||| ||| ||||| | ||| || || | |||||| ||||| ||| | |||||||||
Sbjct 13980 ACACTTCCGAGTGGACGTTTTCGATCATGAACTGAAAGCCGTAGAAGTAACGGGCTTCC 14038
>seq179
Length=47363
Score = 134 bits (148), Expect = 1e-26
Identities = 311/464 (67%), Gaps = 16/464 (3%)
Strand=Plus/Minus
Query 16955 AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAA 17014
|||| ||||||||||| ||| ||||| || || |||||||||||||| || || ||
Sbjct 9370 AACAAAAGACATGCGAAGTCGGTATGTAGACCTTCATCTCTGCTGATAAGCTCATTGGAG 9311
Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074
|| ||||| || |||||| || |||||||| | |||||| || || ||||| || |||
Sbjct 9310 AAAGTCAATCCTGGCATCACACCACGTTTCTTCAGCCAAAAAATGGCCGCGAAGGAACCA 9251
Query 17075 GAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCG--TTC----GGCGTACGTC 17128
||||| || || || || ||| | ||||| || | | | ||| ||| ||
Sbjct 9250 GAAAAAAAGATGCCTTCCACGCAGGCAAAGGCTACGAGGTGGCTTCCAAAGGCAACCGCG 9191
Query 17129 GCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATC 17188
| |||| | ||||||||| |||| || || ||| || ||||| |||||
Sbjct 9190 GAATCTTCG------ATCCATTTCAATGCCCAATCCGCCTTTCTTTTGATGCACTCCATT 9137
Query 17189 GTTTCTATGGCCTTAAATA-AT-TTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGA 17246
||||| | || | || | || | || || || || ||| | ||| || ||||
Sbjct 9136 GTTTCAAGCGCATCGAAGAGATGTAATCGTTCTCGGGT--GTCTGCAACATAGGTGTCGA 9079
Query 17247 TGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGC 17306
|||||| ||| ||||||| || | ||| || || |||||||| ||||||||
Sbjct 9078 TGAGTAAAGAATACGTTTCGGAATGGACGTTTTCGATCATAATCTGAAAACCGTAAAACG 9019
Query 17307 ATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGA 17366
| || |||||| || ||| |||| || | || |||||||||||||
Sbjct 9018 AGCGAGCTTCCAAAGGCCCAATTTCGCAACAGAAGTTTTGTACAAGGTTTTCGTTCACGA 8959
Query 17367 TGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAA 17410
||||||| ||| || ||||| || | | ||| | ||||||
Sbjct 8958 TGCCGTCAGACGCAGCAAAAAATGCAAGGACATGGGTGATGAAA 8915
>seq247
Length=45445
Score = 100 bits (110), Expect = 3e-16
Identities = 157/221 (71%), Gaps = 3/221 (1%)
Strand=Plus/Plus
Query 16955 AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAA 17014
|||| ||||| || || || ||| | ||| |||||||||||||| |||||||| |||
Sbjct 37324 AACAATAGACAGGCAAAGTCCGTATGAAGTCCTTCGTCTCTGCTGATTAGTTCGTTCGAA 37383
Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074
|| || || || ||||| || |||||||| | |||||| | || || ||||| ||
Sbjct 37384 AAAGTTAAGCCTGGCAT-AAGCCCCGTTTCTTAATCCAAAAGACTGCTGCAAACGATCCG 37442
Query 17075 GAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCT 17134
|| ||||| || || || || | ||||| || | || ||||||| | | | ||| |
Sbjct 37443 GAGAAGAAAATGCCTTCCACACACGCAAAGGCAACCAAACGTTCGG-GAAAGAGGCGGAT 37501
Query 17135 TTG-TTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCT 17174
| | | | |||||||||| |||| | ||||||| ||
Sbjct 37502 TGGATCATTAATCCATTTCAATGCCCAGTTCGCTTTTTCCT 37542
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517476417091920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |