Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq32 165 8e-36 seq247 125 7e-24 seq179 113 5e-20 seq1000 100 3e-16 >seq32 Length=1481398 Score = 165 bits (182), Expect = 8e-36 Identities = 306/449 (68%), Gaps = 0/449 (0%) Strand=Plus/Minus Query 16181 TTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATA 16240 || |||| | | |||| |||||| ||||| ||| || | || ||||||| || ||| Sbjct 1084289 TTGAGGTATGTGAACAATAGACATGCGAAATCGGTGTGCAAGCCCTCGTCTCGACTAATA 1084230 Query 16241 AGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCA 16300 || || |||||||| || | || ||||| || |||||||| | ||||||||| | Sbjct 1084229 AGCTCATTGGAAAATGTCAGGCCAGGCATAAGACCACGTTTCTTGATCCAGAATATTGAG 1084170 Query 16301 GCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCG 16360 ||||| ||||| ||||||||||| || || |||| ||||| || | || ||||||||| Sbjct 1084169 GCAAACGACCCAGAAAAGAATATCCCTTCGACAGCAGCAAAGGCAACTAGACGTTCCGCG 1084110 Query 16361 TACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAA 16420 | || | || ||| | ||||||||| | |||| || ||||| | || || ||| Sbjct 1084109 AAGGTTGAATGTTTGTCTGAAATCCATTTTAGAGCCCAATCAGCTTTGCGCTTGATGCAA 1084050 Query 16421 TCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTA 16480 || || |||||||| | || | | | ||||| ||| | || || | Sbjct 1084049 GGAATGGTGTCTATGGCGTCGAAAAGGTGGGCCCGCTCCTGCGGATCCTTGATGTAGCCA 1083990 Query 16481 TCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAG 16540 || || || || ||| |||| || || || ||||| || || ||||| |||||| Sbjct 1083989 TCGATAAGCAACGAATACGTTTCGGAATGGATATTCTCCATCATGATTTGAAAGCCATAG 1083930 Query 16541 AAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTC 16600 ||| | || ||||| | || || ||||| | |||| | ||| | |||||||| || Sbjct 1083929 AAGGAACGCGCCTCGGGTACCTGCACTTCACCACAAAACCTTTCGACGAGGTTCTCGTTT 1083870 Query 16601 ACGATACCGTCACTTGCAGCAAAAAACGC 16629 || || || || || ||||| || || Sbjct 1083869 ACAATGCCATCTGAGGCCGCAAAGAAAGC 1083841 Score = 127 bits (140), Expect = 2e-24 Identities = 289/432 (67%), Gaps = 2/432 (0%) Strand=Plus/Plus Query 16181 TTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATA 16240 || ||||| | || | || || || |||||| || | ||||||||| | ||| || Sbjct 1082026 TTGAGGTGGCTGAAGAGAAGGCATGCAAAGTCGGTGTGCATTCCTTCGTCGCGGCTAATG 1082085 Query 16241 AGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCA 16300 || || ||||||||||| | || ||||| ||||| ||||| | |||||| || | Sbjct 1082086 AGCTCATTGGAAAAAGTCAGGCCAGGCATCAAGCCTCGCTTCTTCATCCAGAAGATGGAC 1082145 Query 16301 GCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCG 16360 || || || ||||| ||||| || || ||||||| ||||| || | || ||||| | Sbjct 1082146 GCGAAAGAGCCCGAGAAGAAGATGCCTTCAACAGCAGCAAACGCCACCAAGCGTTCACCA 1082205 Query 16361 TACGTAGCATCTTTATTACGA-ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACA 16419 | || | | | | | || ||||| ||| || |||| || || || | || | ||| Sbjct 1082206 AAAGTTG-ACCGTCGGTCGGAGATCCAGTTCAGTGCCCAGTCTGCCTTGCGCTTGACACA 1082264 Query 16420 ATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGT 16479 || || || | ||| | || | | ||| ||| | || | ||||| || Sbjct 1082265 CGGAATGGTCTCCACGGCGTCGAAAAGGTACTCGCGTTCGGCAGCGTCCTTGATATAGGT 1082324 Query 16480 ATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATA 16539 || || || | ||| | |||||||| |||||||| || || || || ||||| Sbjct 1082325 GTCGATGAGAAGCGAATACGTCTCTGAGTGAATGTTCTCCATCATGATTTGGAAGCCATA 1082384 Query 16540 GAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATT 16599 ||| ||||||||||| || | ||| || || | |||| || || | |||||||| || Sbjct 1082385 GAAACATCGAGCCTCGGCAACTTGGACCTCGTTGGAAAAGCGCTCGACAAGGTTCTCGTT 1082444 Query 16600 CACGATACCGTC 16611 || ||||| || Sbjct 1082445 GACAATACCATC 1082456 >seq247 Length=45445 Score = 125 bits (138), Expect = 7e-24 Identities = 127/164 (77%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 16193 AACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAA 16252 |||| |||||| || ||||| ||| |||||||||||||||||||| |||||||| ||| Sbjct 37324 AACAATAGACAGGCAAAGTCCGTATGAAGTCCTTCGTCTCTGCTGATTAGTTCGTTCGAA 37383 Query 16253 AAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCC 16312 |||||||| ||||||| | || |||||||| | ||| || | || ||||| || || Sbjct 37384 AAAGTTAAGCCTGGCA-TAAGCCCCGTTTCTTAATCCAAAAGACTGCTGCAAACGATCCG 37442 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTC 16356 || ||||| || || || ||| | ||||| || | || ||||| Sbjct 37443 GAGAAGAAAATGCCTTCCACACACGCAAAGGCAACCAAACGTTC 37486 >seq179 Length=47363 Score = 113 bits (124), Expect = 5e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 16193 AACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAA 16252 |||| ||||| ||||||||| |||||| ||||| |||||||||||||| || ||||| Sbjct 9370 AACAAAAGACATGCGAAGTCGGTATGTAGACCTTCATCTCTGCTGATAAGCTCATTGGAG 9311 Query 16253 AAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCC 16312 ||||| || |||||||| || |||||||| | ||| || || || || || || || Sbjct 9310 AAAGTCAATCCTGGCATCACACCACGTTTCTTCAGCCAAAAAATGGCCGCGAAGGAACCA 9251 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 ||||| || || || || || | ||||| || Sbjct 9250 GAAAAAAAGATGCCTTCCACGCAGGCAAAGGC 9219 >seq1000 Length=18647 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 |||||||||||| ||| || || ||||| | ||||| | ||| ||||| ||||| || Sbjct 12401 CACGCGAAGTCGGTATGGAGGCCCTCGTCACAACTGATCAATTCATTGGAGAAAGTCAAT 12342 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAAT 16321 || ||||| ||||| ||||| | ||| || || || |||||||| || |||||||| Sbjct 12341 CCAGGCATGAGCCCTCGCTTCTTGATCCAAAAGATAGCTGCAAATGAGCCGGAAAAGAAA 12282 Query 16322 ATACCCTCAACAGATGCAAAAGC 16344 || || |||||| | | ||| || Sbjct 12281 ATGCCTTCAACACAGGAAAATGC 12259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511346036680080