Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq32 147 3e-30 seq925 132 6e-26 seq1000 116 4e-21 seq434 102 1e-16 seq247 100 3e-16 >seq32 Length=1481398 Score = 147 bits (162), Expect = 3e-30 Identities = 310/460 (67%), Gaps = 7/460 (2%) Strand=Plus/Minus Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 |||| | ||||||||||||| ||| | |||||||||| |||||| | || |||||| Sbjct 1084277 AACAATAGACATGCGAAATCGGTGTGCAAGCCCTCGTCTCGACTAATAAGCTCATTGGAA 1084218 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || || || || ||||| || ||||| || || | ||| ||||| || ||||| || ||| Sbjct 1084217 AATGTCAGGCCAGGCATAAGACCACGTTTCTTGATCCAGAATATTGAGGCAAACGACCCA 1084158 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CG 24302 |||||||| || ||||| || || |||||||||| || | ||| | | | Sbjct 1084157 GAAAAGAATATCCCTTCGACAGCAGCAAAGGCAACTAGACGTTCCGCGAAGGTTGAATGT 1084098 Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 |||| ||||| ||| |||||||||| || || || | ||||| || || ||| Sbjct 1084097 TTGTCTGAAATCCATTTTAGAGCCCAATCAGCTTTGCGCTTGATGCAAGGAATGGTGTCT 1084038 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAA 24420 || || | || || | | || | ||| || | || ||| || | || Sbjct 1084037 ATGGCGTCGAAAAGGTGGGCCCGCTCCTGCGGATCCTTGATGTAGCCATCGATAAGCAAC 1083978 Query 24421 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAG 24480 || |||| |||| ||||| || || || || |||||||| || ||||| | | | Sbjct 1083977 GA--ATACGTTTCGGAATGGATATTCTCCATCATGATTTGAAAGCCATAGAAGGAACGCG 1083920 Query 24481 CCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 24540 |||||| | ||| ||||| |||||| | ||| | | || || || || || || | Sbjct 1083919 CCTCGGGTACCTGCACTTCACCACAAAACCTTTCGACGAGGTTCTCGTTTACAATGCCAT 1083860 Query 24541 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 24580 | ||| ||||| || || | ||||| ||||||||| Sbjct 1083859 CTGAGGCCGCAAAGAAAGCAAGAACATGCGATATAAAATA 1083820 >seq925 Length=43645 Score = 132 bits (146), Expect = 6e-26 Identities = 240/347 (69%), Gaps = 7/347 (2%) Strand=Plus/Plus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 || ||| |||||||| ||| |||||||| |||| || || | ||||| | |||| Sbjct 13681 CATACACGCGAAATCTGTGTGAAGACCCTCATCTCGGCTGATAAGCTCGTTTGCGAACGA 13740 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 24250 ||||| ||||| | || | || || | |||||| || | || ||||| || ||||| Sbjct 13741 TAGTCCTGGCATCAAACCCCTTTTCTTCAACCAAAAGATCGCGGCGAATGAGCCGGAAAA 13800 Query 24251 GAAAATTCCTTCTACTGCCGC-AAAGGCAATAAGTCTTTCTCCATAACCGGCGCT----G 24305 |||||| |||||||| || |||| ||| || || ||| || ||| | | | Sbjct 13801 GAAAATCCCTTCTACGCATGCGAAAGCCAACAA-TCGTTCACC-GAACGTTCTTTCCTCG 13858 Query 24306 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 24365 ||| |||||| | ||||||||| || || || || || ||||| ||||| || || Sbjct 13859 TCAGTTATCCAAGTCAAAGCCCAATCTGCTTTTTTCTTCACGCAAGGAATTGTTTCCATC 13918 Query 24366 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 24425 ||||| || || | | || |||| || || || | ||| | || |||||||| | Sbjct 13919 GCATTGAATAGTTCGCTTCTTTCGTTGTCGTCCTTGATATAACTGTCGATCAAAAGCGAA 13978 Query 24426 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 24472 |||| |||||| || | |||||| || | ||||| |||||||| Sbjct 13979 TACACTTCCGAGTGGACGTTTTCGATCATGAACTGAAAGCCGTAGAA 14025 >seq1000 Length=18647 Score = 116 bits (128), Expect = 4e-21 Identities = 227/331 (69%), Gaps = 7/331 (2%) Strand=Plus/Minus Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 |||| ||| || ||||| ||| || || |||||||| | ||| || ||||| ||||| Sbjct 12410 AACAGCAAGCACGCGAAGTCGGTATGGAGGCCCTCGTCACAACTGATCAATTCATTGGAG 12351 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || || | ||| ||||| || || ||||| || | |||||| || | |||||||| || Sbjct 12350 AAAGTCAATCCAGGCATGAGCCCTCGCTTCTTGATCCAAAAGATAGCTGCAAATGAGCCG 12291 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCC--ATAACCG-GCG 24302 ||||||||||| ||||| || | ||| || | ||| | || | | |||| | | Sbjct 12290 GAAAAGAAAATGCCTTCAACACAGGAAAATGCCAAAAGACGCTCAGCGAACGACCGCGAG 12231 Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 | ||| ||||| | ||||| || |||||||| || || ||||||| || || Sbjct 12230 CGGTCGGTAATCCATGTCATCGCCCATTCTGCCTTCTTCTTCACGCAAGGCACAGTTTCG 12171 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAA 24420 ||||| || || || || || || || ||| | | || || || || | || Sbjct 12170 ATAGCGTTGAAAAGTAAGGCCTTCTCCTTGGGATCGGTGATGTAGGTGTCGATTAACAAG 12111 Query 24421 GACTATACATTTCCGAATGAATGTTTTCAAT 24451 || ||| |||| ||||||| |||||||| Sbjct 12110 GAGTAT--GTTTCAGAATGAACATTTTCAAT 12082 >seq434 Length=244965 Score = 102 bits (112), Expect = 1e-16 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 54041 AAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC 54099 || || ||||| ||||| || || || ||| |||||||| | ||| ||| || || || Sbjct 87307 AAAAGGTCAGGGATCCACAGCGCGTAGAAA-AGATCTCTTGCCCTAGATTCTTCCTTGCC 87365 Query 54100 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 54159 |||||| | ||||||||| | | | ||||| |||||| ||||| | ||| || Sbjct 87366 ATGATTCTTCCGTAAATCGAGGAAATCAAACACATCAGCATGCCAGGGTTCGATGTAGAT 87425 Query 54160 GGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 54219 | | |||| || || ||||||||||| ||||| | ||| | ||| ||| || ||| Sbjct 87426 CGCGAATGCTCCTGGTCGCTTGTTTCCTCCTTGATCGACGTAGCGAGCAGTGGCATCATA 87485 Query 54220 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCC 54264 | | | | |||||| | || ||||| || |||||||||||| Sbjct 87486 AGCACGAAGCATTGGCACTATGCCATTTGAATAACCATTGGTCCC 87530 >seq247 Length=45445 Score = 100 bits (110), Expect = 3e-16 Identities = 358/548 (65%), Gaps = 25/548 (5%) Strand=Plus/Plus Query 24150 TGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 24209 || || || |||||||| || |||| |||||| ||||| || | || ||||| || || Sbjct 37348 TGAAGTCCTTCGTCTCTGCTGATTAGTTCGTTCGAAAAAGTTAAGCCTGGCATAAGCCC- 37406 Query 24210 CGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCC 24269 || || |||| |||||| | | ||||| ||||| || |||||||| ||||| || | Sbjct 37407 CGTTTCTTAATCCAAAAGACTGCTGCAAACGATCCGGAGAAGAAAATGCCTTCCACACAC 37466 Query 24270 GCAAAGGCAATAAGTCTTTCTCCATAACCGGCG--CTG--TCATGTATCCACTTTTGAGC 24325 |||||||||| | | ||| | || |||| || |||| ||||| || || Sbjct 37467 GCAAAGGCAACCAAACGTTCGGGA-AAGAGGCGGATTGGATCATTAATCCATTTCAATGC 37525 Query 24326 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt 24385 ||| | || || | | | ||| || || ||||| ||||| || |||||| | Sbjct 37526 CCAGTTCGCTTTTTCCTGGATACAGGGAATAGTCTCGATAGCGTTGAAGAGACGGGCCCG 37585 Query 24386 ttCATTACTATCTTTAACATATGTATCAATCAA--AAGACTATACATTTCCGAATGAATG 24443 ||| | || || || ||| ||||| ||||| || ||| | || || |||| Sbjct 37586 TTCCGTGCTGTCACGAATATAGGTATCTATCAAGGTCGAATATGC--CTCGGAGTGAACA 37643 Query 24444 TTTTCAATGGCCAT---TTGAAATCCGTAGAAACATCTAGCCTC---GGTAATCTGTACT 24497 ||||| || ||| ||| || ||||| || | ||||| || | | | | Sbjct 37644 TTTTCGAT---CATTGATTGGAAACCGTAAAAGGCACGGGCCTCCCAGGGA--CCG-ATC 37697 Query 24498 TCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 24557 ||| | | || ||||| |||||||| || || || ||||| |||||| || || Sbjct 37698 TCTTGAGAGAACCGTTCCAGCAAATTTTCGTTAACGATGCCGTCCGAGGCTGCGAAGAAG 37757 Query 24558 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTG 24614 |||| |||||| | ||||| | | || || | | | || | ||| || Sbjct 37758 GCCAGCACATGTGACAAAAAATGTCTGTCATCGTTCGACAGACGGTTCTCCCAGTCGCCC 37817 Query 24615 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 24674 | |||| | | ||| | || ||||| ||||| ||||| ||||| ||||| |||||| Sbjct 37818 AAATCTGAACGAAGATCAAGCTCCTCCACGGTCCAGAATGACGCCTCCGCCTTCTTATAC 37877 Query 24675 ATATTCCA 24682 || | ||| Sbjct 37878 ATCTGCCA 37885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593642234265120