Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq32 289 3e-73 seq1000 152 5e-32 seq247 143 3e-29 seq9840 98.7 1e-15 seq106 96.9 4e-15 seq451 82.4 8e-11 >seq32 Length=1481398 Score = 289 bits (320), Expect = 3e-73 Identities = 408/571 (71%), Gaps = 9/571 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||||||||| ||||| | ||||| ||||||| Sbjct 1082603 ATCTGGCAAATGTACAAGAAGGCTGAGGCGTCGTTTTGGACTGCAGAGGAAATGGACCTC 1082544 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 || || || | |||||| ||| | |||||||||||||||||||||||| Sbjct 1082543 TCGAAAGATATTCATGACTGGACCACCCGCCTTAACGACAACGAGCGCCATTTCATCTCC 1082484 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 || || || || || ||||| ||| || || || ||||||||||| || |||||||| Sbjct 1082483 CATGTCCTCGCTTTCTTCGCAGCCTCGGATGGTATTGTCAACGAGAACCTTGTCGAGCGC 1082424 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 || | | ||||| || || |||||||| || || ||||| ||||| || ||| ||| Sbjct 1082423 TTTTCCAACGAGGTCCAAGTTGCCGAGGCTCGATGTTTCTATGGCTTCCAAATCATGATG 1082364 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA---CGTGCGCTCTTCG 116929 |||||| | ||||| || | ||||||| ||||||||||| || | | | || | Sbjct 1082363 GAGAACATTCACTCAGAGACGTATTCGCTTCTCATCGACACCTATATCAAGGACGCTGCC 1082304 Query 116930 GAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCC 116989 || || || | || ||||| | ||||| || ||||| ||||| ||||| Sbjct 1082303 GAACGCGAGTACC---TTTTCGACGCCGTGGAGACCATTCCGTGTGTCAAGCGCAAGGCA 1082247 Query 116990 GAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCC 117049 || ||||| ||| ||||||| ||| | || | | | || || || ||| ||||||| Sbjct 1082246 GACTGGGCACTGAACTGGATCTCCGACCGACGGTCAACTTTTGGTGAACGCTTGGTGGCG 1082187 Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109 || || || || || ||| ||||||| |||||| |||||| |||| || ||| | ||| Sbjct 1082186 TTTGCTGCTGTTGAAGGCATCTTCTTCTCGGGCTCTTTCGCGTCCATCTTCTGGATGAAG 1082127 Query 117110 AAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169 || || ||| | ||||| ||||||||||| ||| |||||||| | | ||||| || Sbjct 1082126 AAGCGAGGCTTGATGCCTGGCCTGACTTTTTCCAATGAGCTCATTAGCCGCGACGAAGGA 1082067 Query 117170 CTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 |||| ||||||||| || | || |||| Sbjct 1082066 ATGCACACCGACTTTGCATGCCTTCTCTTCA 1082036 >seq1000 Length=18647 Score = 152 bits (168), Expect = 5e-32 Identities = 307/453 (68%), Gaps = 12/453 (3%) Strand=Plus/Plus Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 |||||| |||| ||||| || || ||| || || ||||||||||| || | || | Sbjct 11965 CACGTGTTGGCTTTTTTTGCGGCGTCCGATGGAATTGTCAACGAGAACTTGCTGGAAAAT 12024 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAG----GCGCGGTGCTTCTACGGCTTTCAGATCGC 116868 |||||||||||||| | |||||| || || ||||| | ||| ||| || Sbjct 12025 TTCGCTCAGGAGGT----TTCGCCGAGAGAAGCTTGGGCTTTCTATGCCTTCCAGGTCAT 12080 Query 116869 CATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTC 116928 || || || || || || |||| || || | |||||||| ||| | | | | Sbjct 12081 GATTGAAAATGTTCATTCTGAAACATACTCCTTGTTAATCGACACCTACATCACCGATCC 12140 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 |||||||| | | || ||||| ||||| || |||| ||||| || ||||||| Sbjct 12141 CAAGGAGAAGGCCTTACTTTTCAACGCTATCGAAACTGTGCCTTGCGTGAAGAAGAAGGC 12200 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAG--AGAGGCCGCCTTCGGCGAGCGCCTGGTG 117046 || |||||| || ||||| ||| | | | || || |||| ||||| || || Sbjct 12201 AGAATGGGCGATGACATGGATTACCGACCGCTCGCGGTCG--TTCGCTGAGCGTCTTTTG 12258 Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 || || | || || ||| | |||||||| ||| || || || || |||||| || Sbjct 12259 GCATTTTCCTGTGTTGAAGGCATTTTCTTTTCCGGCTCATTTGCAGCTATCTTTTGGATC 12318 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166 ||||| || || |||||||| || |||||||| ||| || | ||| | |||||| Sbjct 12319 AAGAAGCGAGGGCTCATGCCTGGATTGACTTTCTCCAATGAATTGATCAGTTGTGACGAG 12378 Query 117167 GGTCTGCATTGCGACTTTGCCTGTTTGCTGTTC 117199 || || ||| |||||| || || ||||||||| Sbjct 12379 GGCCTCCATACCGACTTCGCGTGCTTGCTGTTC 12411 >seq247 Length=45445 Score = 143 bits (158), Expect = 3e-29 Identities = 384/573 (67%), Gaps = 18/573 (3%) Strand=Plus/Minus Query 116637 TGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT-- 116694 |||||| ||||| || ||||| |||||||| ||||||||||| |||||| | || || Sbjct 37887 TGTGGCAGATGTATAAGAAGGCGGAGGCGTCATTCTGGACCGTGGAGGAGCTTGATCTTC 37828 Query 116695 GTCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 || || || | ||||||||||| || || || | || | ||||| | Sbjct 37827 GTTCA--GATTTGGGCGACTGGGAGAACCGTCTGTCGAACGATGACAGACATTTTTTGTC 37770 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 || ||||||||||| ||||| ||| ||||||||||| ||||| ||| || | || || Sbjct 37769 ACATGTGCTGGCCTTCTTCGCAGCCTCGGACGGCATCGTTAACGAAAATTTGCTGGAACG 37710 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGC--CGAGGCGCGGTGCTTCTACGGCTTTCAGATC-GC 116868 ||| |||| ||| | ||| | ||||| || ||| ||||| |||| ||| Sbjct 37709 GTTCTCTCAAGAGAT--CGGTCCCTGGGAGGCCCGTGCCTTTTACGG-TTTCCAATCAAT 37653 Query 116869 CATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTC 116928 || || || || ||||| || ||||||||| | || || || || | || | Sbjct 37652 GATCGAAAATGTTCACTCCGAGGCATATTCGACCTTGATAGATACCTATATTCG-TGACA 37594 Query 116929 GGA-GGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | | ||| | |||| | || ||||| |||||||| || || || || | || || | Sbjct 37593 GCACGGAACGGGCCCGTCTCTTCAACGCTATCGAGACTATTCCCTGTATCCAGGAAAAAG 37534 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCG-GCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTG 117046 | | ||||| || ||||| | | | ||| | ||| ||| || |||| Sbjct 37533 CGAACTGGGCATTGAAATGGATTAATGATCCAATCCGCCTCTTTC-CCGAACGTTTGGTT 37475 Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 ||||| ||| || || ||| | ||||| || || || || || | |||||| | Sbjct 37474 GCCTTTGCGTGTGTGGAAGGCATTTTCTTCTCCGGATCGTTTGCAGCAGTCTTTTGGATT 37415 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166 |||||||| || || ||||| ||| | ||||| ||||| || ||| ||| ||||| Sbjct 37414 AAGAAACG-GGGCTTATGCCAGGCTTAACTTTTTCGAACGAACTAATCAGCAGAGACGAA 37356 Query 117167 GGTCTGCATTGCGACTTTGCCTGTTTGCTGTTC 117199 || || ||| |||||||||||| | ||||| Sbjct 37355 GGACTTCATACGGACTTTGCCTGTCTATTGTTC 37323 >seq9840 Length=425 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| || ||||| | || || || | || Sbjct 34 ATGCAGATTTTTGTGAAGACATTGACCGGCAAGACGATCACGCTGGAAGTGGAGTCTTCC 93 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||| |||| || || |||||||| || | || ||| Sbjct 94 GACACCATCGACAATGTCAAGGCAAAGATTCAGGATAAGGAGGGCATTCCTCCCGATCAG 153 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| ||||| || || || |||| || || || || |||||| Sbjct 154 CAGCGCCTAATTTTCGCCGGCAAGCAACTCGAGGACGGTCGAACTCTTTCTGATTACAAC 213 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | ||||| ||||| || Sbjct 214 ATCCAGAAGGAGTCAACGCTCCATCTCGT 242 >seq106 Length=225739 Score = 96.9 bits (106), Expect = 4e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 40795 ATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACC 40854 ||||| | |||||||| || || |||| ||| ||||| |||||||| || | |||||| Sbjct 79797 ATCCCTCCCGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACC 79738 Query 40855 CTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||| ||||||||||||||| |||||| |||| || || Sbjct 79737 CTCAGCGACTACAACATCCAAAAGGAGTCCACTCTCCA 79700 >seq451 Length=165701 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 40795 ATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACC 40854 ||||| | ||||| || || || |||| || ||||| ||||| || |||| ||||| Sbjct 12585 ATCCCGCCCGACCAACAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACT 12644 Query 40855 CTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||| |||||||||||||||||||||| | || || || Sbjct 12645 CTCAGCGACTACAACATCCAGAAGGAGTCGACACTTCA 12682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515150328073440