Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq925 156 4e-33 seq32 143 3e-29 seq179 120 3e-22 seq1000 96.9 3e-15 >seq925 Length=43645 Score = 156 bits (172), Expect = 4e-33 Identities = 301/435 (69%), Gaps = 12/435 (3%) Strand=Plus/Plus Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 |||||| ||||| ||||| |||||||||| || ||||| ||||||| || | || Sbjct 13684 ACACGCGAAATCTGTGTGAAGACCCTCATCTCGGCTGATAAGCTCGTTTGCGAACGATAG 13743 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 14322 |||||||||||| || | ||| || |||||||| || || |||||||| ||||||||||| Sbjct 13744 TCCTGGCATCAAACCCCTTTTCTTCAACCAAAAGATCGCGGCGAATGAGCCGGAAAAGAA 13803 Query 14323 TATTCCCTCAACTGCA-GCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCG 14381 || || || || ||| || || || | |||||||| || |||| | || | || | Sbjct 13804 AATCCCTTCTAC-GCATGCGAAAGCCAACAATCGTTCACCGAACGTTCTTTCCTCGTCAG 13862 Query 14382 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCAT 14441 |||||| | |||||| || | |||||| || | || |||||||| || |||| Sbjct 13863 TTATCCAAGTCAAAGCCCAATCTGCTTTTTTCTTCACGCAAGGAATTGTTTCCATCGCAT 13922 Query 14442 TAAATAAAT--GTTCCTTCTCTTTAGTACTTGAAATGTATGT--ATCAATAAGTAAGCTA 14497 | |||| | ||| ||| | | || ||||| || ||| ||||| ||| | | Sbjct 13923 TGAATAGTTCGCTTCTTTCGTTGTCGTCCTTGATATAACTGTCGATCAA-AAGCGA---A 13978 Query 14498 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCT 14557 |||| ||| ||||| | |||||| || | |||||| || || || | | ||||| Sbjct 13979 TACACTTCCGAGTGGACGTTTTCGATCATGAACTGAAAGCCGTAGAAGTAACGGGCTTCC 14038 Query 14558 GACCATTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14616 | || || || | ||| | |||| |||| || || || || || ||||| Sbjct 14039 AAAGGGCCGACTTCTTGCGCAAAGT-TTTCCACCAAGTTCTCGTTCACGATTCCATCGGA 14097 Query 14617 AGCTGCAAAAAATGC 14631 ||||||||||| || Sbjct 14098 TGCTGCAAAAAAAGC 14112 >seq32 Length=1481398 Score = 143 bits (158), Expect = 3e-29 Identities = 376/567 (66%), Gaps = 15/567 (3%) Strand=Plus/Minus Query 14200 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 14259 || ||| || ||||| || | |||||| |||| ||||||||| || || |||||||| Sbjct 1084272 TAGACATGCGAAATCGGTGTGCAAGCCCTCGTCTCGACTAATAAGCTCATTGGAAAATGT 1084213 Query 14260 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA 14319 | || ||||| | || ||||| || | ||| ||||||| || || || || ||||| Sbjct 1084212 CAGGCCAGGCATAAGACCACGTTTCTTGATCCAGAATATTGAGGCAAACGACCCAGAAAA 1084153 Query 14320 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14379 |||||| || || || |||||||| || | || ||||| | || | || | ||||| Sbjct 1084152 GAATATCCCTTCGACAGCAGCAAAGGCAACTAGACGTTCCGCGAAGGTTGAATGTTTGTC 1084093 Query 14380 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14439 || ||||||||| |||||| |||| ||| || || || || || || || || Sbjct 1084092 TGAAATCCATTTTAGAGCCCAATCAGCTTTGCGCTTGATGCAAGGAATGGTGTCTATGGC 1084033 Query 14440 ATTAAATAAATGTTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTA 14497 | || | || || ||| | | | |||| ||||| ||| ||||| || | Sbjct 1084032 GTCGAAAAGGTGGGCCCGCTCCTGCGGATCCTTG--ATGTAGCCATCGATAAGCAACGAA 1083975 Query 14498 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCT 14557 ||| |||| || || || || ||||| || ||||| ||||| || | | || || Sbjct 1083974 TACGTTTCGGAATGGATATTCTCCATCATGATTTGAAAGCCATAGAAGGAACGCGCCTCG 1083915 Query 14558 G--ACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14615 | ||| || || || |||| |||||| | | || || || || || ||||| Sbjct 1083914 GGTACC--TGCACTTCACCACAAAACCTTTCGACGAGGTTCTCGTTTACAATGCCATCTG 1083857 Query 14616 TAGCTGCAAAAAATGC--CAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTT 14673 || ||||| || || || ||| | ||||| || |||| |||| | |||| || Sbjct 1083856 AGGCCGCAAAGAAAGCAAGAACATGCGAT--ATAAAATACCGCTCATCATGGTTGAGATT 1083799 Query 14674 ---TTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGC 14730 ||||| || | || || | ||||| || | ||| ||| ||||||| || || Sbjct 1083798 GAAGTTCCAGTCCACGAAGTCATGGGAAAGGTCAAGTTCTTCAGCTGTCCAGAATGAGGC 1083739 Query 14731 AACAGCTTTTTTATACATTACCCATAT 14757 |||||| || || | | |||||| Sbjct 1083738 TTGAGCTTTCTTGTAGAATTGCCATAT 1083712 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 14237 CTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAAT 14296 ||||| || || || ||||| || | || |||||||| ||||| || || | ||| || Sbjct 1082080 CTAATGAGCTCATTGGAAAAAGTCAGGCCAGGCATCAAGCCTCGCTTCTTCATCCAGAAG 1082139 Query 14297 ATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGT 14356 || | ||||| || || || ||||| || || ||||| ||||||||||| | || ||| Sbjct 1082140 ATGGACGCGAAAGAGCCCGAGAAGAAGATGCCTTCAACAGCAGCAAACGCCACCAAGCGT 1082199 Query 14357 TCTCCAAA 14364 || ||||| Sbjct 1082200 TCACCAAA 1082207 >seq179 Length=47363 Score = 120 bits (132), Expect = 3e-22 Identities = 237/344 (69%), Gaps = 10/344 (3%) Strand=Plus/Minus Query 14218 ATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCC 14277 ||| || || |||||||| || ||||| || || || || || ||||||||||||| || Sbjct 9347 ATGTAGACCTTCATCTCTGCTGATAAGCTCATTGGAGAAAGTCAATCCTGGCATCACACC 9288 Query 14278 TCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGC 14337 ||||| || | |||||| || || ||||| || || ||||| || || || || || || Sbjct 9287 ACGTTTCTTCAGCCAAAAAATGGCCGCGAAGGAACCAGAAAAAAAGATGCCTTCCAC-GC 9229 Query 14338 A-GCAAACGCTATTAATCGTTCTCCAAA--CGATGCTTTTTTGTTCGATATCCATTTTCT 14394 | ||||| |||| | | |||||| | | | |||| |||||||| Sbjct 9228 AGGCAAAGGCTACGAGGTGGCTTCCAAAGGCAACCGCGGAATCTTCG--ATCCATTTCAA 9171 Query 14395 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGT-- 14452 ||||| || | ||| |||| || | ||||||||||||| |||| || | |||| Sbjct 9170 TGCCCAATCCGCCTTTCTTTTGATGCACTCCATTGTTTCAAGCGCATCGAAGAGATGTAA 9111 Query 14453 TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 14512 || ||||| || || || || || || || ||||| |||| |||| || || Sbjct 9110 TCGTTCTC--GGGTGTCTGCAACATAGGTGTCGATGAGTAAAGAATACGTTTCGGAATGG 9053 Query 14513 ATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14556 | |||||| || ||||||||||| ||||| | | |||||| Sbjct 9052 ACGTTTTCGATCATAATCTGAAAACCGTAAAACGAGCGAGCTTC 9009 >seq1000 Length=18647 Score = 96.9 bits (106), Expect = 3e-15 Identities = 365/562 (65%), Gaps = 13/562 (2%) Strand=Plus/Minus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 || ||||| || || ||| |||||||| || | ||| || | ||| || || || || Sbjct 12404 AAGCACGCGAAGTCGGTATGGAGGCCCTCGTCACAACTGATCAATTCATTGGAGAAAGTC 12345 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 ||||| ||||| | ||||| || || | |||||| || || || ||||| ||||||||| Sbjct 12344 AATCCAGGCATGAGCCCTCGCTTCTTGATCCAAAAGATAGCTGCAAATGAGCCGGAAAAG 12285 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14380 || || || ||||| | ||| || | | || || | ||||| | | || Sbjct 12284 AAAATGCCTTCAACACAGGAAAATGCCAAAAGACGCTCAGCGAACGA-CCGCGAGCGGTC 12226 Query 14381 GAT-ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14439 | | |||||| | | |||||||| | || || || | || || ||||| ||||| Sbjct 12225 GGTAATCCATGTCATCGCCCATTCTGCCTTCTTCTTCACGCAAGGCACAGTTTCGATAGC 12166 Query 14440 ATT--AAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 14497 || ||| || | ||||||| || | | | ||||| || || || | ||| Sbjct 12165 GTTGAAAAGTAAGG--CCTTCTCCTTGGGATCGGTGATGTAGGTGTCGATTAACAAGGAG 12108 Query 14498 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCT 14557 || ||||||| || | ||||| || | ||| || |||| ||| | ||||||| Sbjct 12107 TATGTTTCAGAATGAACATTTTCAATCATGACCTGGAAGGCATAGAAAGCCCAAGCTTCT 12048 Query 14558 GACCATTGTACCT-CTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14616 | |||| ||||| |||| |||| ||| || || || || || ||||| Sbjct 12047 CTCGGCGAAACCTCCTGAGCGAAAT-TTTCCAGCAAGTTCTCGTTGACAATTCCATCGGA 11989 Query 14617 AGCTGCAAAAAATGCCAATATGTTTTTAA-TAAAG---TATTGCTCTTCATTGCTGAGTT 14672 || |||||||| ||||| | || | || |||| | | || | | | | | | Sbjct 11988 CGCCGCAAAAAAAGCCAACACGTGTGAAAGGAAAGACCTTTCGC-CAGAAGTCAGGTGAT 11930 Query 14673 TTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAA 14732 || |||| ||| | | || || | ||||||| |||||| ||||||||| || Sbjct 11929 TTGTCCAGTCGACGACGTCGTTCGCCAGATCTAATTCATCTGTCGTCCAAAAAGATGCTT 11870 Query 14733 CAGCTTTTTTATACATTACCCA 14754 | |||| ||| ||||| |||| Sbjct 11869 CGGCTTGTTTGTACATGGCCCA 11848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482281122451920