Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq925 154 2e-32 seq32 150 2e-31 seq1000 129 7e-25 seq434 105 8e-18 >seq925 Length=43645 Score = 154 bits (170), Expect = 2e-32 Identities = 304/438 (69%), Gaps = 15/438 (3%) Strand=Plus/Plus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 || ||| |||||||| ||| |||||||| |||| || || | ||||| | |||| Sbjct 13681 CATACACGCGAAATCTGTGTGAAGACCCTCATCTCGGCTGATAAGCTCGTTTGCGAACGA 13740 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 ||||| ||||| | || | || || | |||||| || | |||||||| |||||||| Sbjct 13741 TAGTCCTGGCATCAAACCCCTTTTCTTCAACCAAAAGATCGCGGCGAATGAGCCGGAAAA 13800 Query 33698 GAAGATTCCTTCTACTGCA-GC-AAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---- 33751 ||| || |||||||| ||| || |||| ||| || || || || ||| | | Sbjct 13801 GAAAATCCCTTCTAC-GCATGCGAAAGCCAACAA-TCGTTCACCG-AACGTTCTTTCCTC 13857 Query 33752 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33811 |||| |||||| | ||||||||| || || || || || ||||| || ||||| || Sbjct 13858 GTCAGTTATCCAAGTCAAAGCCCAATCTGCTTTTTTCTTCACGCAAGGAATTGTTTCCAT 13917 Query 33812 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 33871 ||||| || || | | || |||| || || || | |||| | ||||||||||| Sbjct 13918 CGCATTGAATAGTTCGCTTCTTTCGTTGTCGTCCTTGATATAACTGTCGATCAAAAGCGA 13977 Query 33872 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33931 ||||| |||||| || | |||||| || | |||||| |||||||| | | || || Sbjct 13978 ATACACTTCCGAGTGGACGTTTTCGATCATGAACTGAAAGCCGTAGAAGTAACGGGCTTC 14037 Query 33932 GGTAATCTGC--ACTTC-TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATC 33988 || || ||||| || |||| | ||| | || || || ||||| |||||||| Sbjct 14038 --CAAAGGGCCGACTTCTTGCGCAAAGT-TTTCCACCAAGTTCTCGTTCACGATTCCATC 14094 Query 33989 ACTGGCTGCAAAAAACGC 34006 ||||||||||| || Sbjct 14095 GGATGCTGCAAAAAAAGC 14112 >seq32 Length=1481398 Score = 150 bits (166), Expect = 2e-31 Identities = 311/460 (68%), Gaps = 7/460 (2%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| | ||||||||||||| ||||| |||||||||| |||||| | || || ||| Sbjct 1084277 AACAATAGACATGCGAAATCGGTGTGCAAGCCCTCGTCTCGACTAATAAGCTCATTGGAA 1084218 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || || ||||| || ||||| || || | ||| ||||| || || || || || Sbjct 1084217 AATGTCAGGCCAGGCATAAGACCACGTTTCTTGATCCAGAATATTGAGGCAAACGACCCA 1084158 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CG 33749 |||||||| || ||||| || ||||||||||||| || | || | | | Sbjct 1084157 GAAAAGAATATCCCTTCGACAGCAGCAAAGGCAACTAGACGTTCCGCGAAGGTTGAATGT 1084098 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 |||| ||||| ||| |||||||||| || || || | ||||| || || ||| Sbjct 1084097 TTGTCTGAAATCCATTTTAGAGCCCAATCAGCTTTGCGCTTGATGCAAGGAATGGTGTCT 1084038 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAA 33867 ||||| | || || | | || | ||| || | || |||||| | || Sbjct 1084037 ATGGCGTCGAAAAGGTGGGCCCGCTCCTGCGGATCCTTGATGTAGCCATCGATAAGCAAC 1083978 Query 33868 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33927 || |||| |||| ||||| || || || || || ||||| || ||||| | | | Sbjct 1083977 GA--ATACGTTTCGGAATGGATATTCTCCATCATGATTTGAAAGCCATAGAAGGAACGCG 1083920 Query 33928 CCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCAT 33987 |||||| | ||||||||| |||||| | ||| | | || || || || || |||| Sbjct 1083919 CCTCGGGTACCTGCACTTCACCACAAAACCTTTCGACGAGGTTCTCGTTTACAATGCCAT 1083860 Query 33988 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 34027 | ||| ||||| || || | ||||| ||||||||| Sbjct 1083859 CTGAGGCCGCAAAGAAAGCAAGAACATGCGATATAAAATA 1083820 >seq1000 Length=18647 Score = 129 bits (142), Expect = 7e-25 Identities = 372/564 (66%), Gaps = 20/564 (4%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| ||| || ||||| ||| || || |||||||| | ||| || ||||| || || Sbjct 12410 AACAGCAAGCACGCGAAGTCGGTATGGAGGCCCTCGTCACAACTGATCAATTCATTGGAG 12351 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || | ||| ||||| || || ||||| || | |||||| || | || ||||| ||| Sbjct 12350 AAAGTCAATCCAGGCATGAGCCCTCGCTTCTTGATCCAAAAGATAGCTGCAAATGAGCCG 12291 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAACCG-GCG 33749 |||||||| || ||||| || | ||| || | ||| | ||| | | |||| | | Sbjct 12290 GAAAAGAAAATGCCTTCAACACAGGAAAATGCCAAAAGACGCTCAGCGAACGACCGCGAG 12231 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 | ||| ||||| | ||||| || |||||||| || || ||||||| ||||| Sbjct 12230 CGGTCGGTAATCCATGTCATCGCCCATTCTGCCTTCTTCTTCACGCAAGGCACAGTTTCG 12171 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAA 33867 || || || || || || || || || ||| | | || || ||||| | || Sbjct 12170 ATAGCGTTGAAAAGTAAGGCCTTCTCCTTGGGATCGGTGATGTAGGTGTCGATTAACAAG 12111 Query 33868 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33927 || ||| |||| ||||||| |||||||| | ||| || | |||||| | || Sbjct 12110 GAGTAT--GTTTCAGAATGAACATTTTCAATCATGACCTGGAAGGCATAGAAAGCCCAAG 12053 Query 33928 C----CTCGG-TAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTAT 33982 | ||||| || | || ||| | |||| | | || || || || || || || Sbjct 12052 CTTCTCTCGGCGAAAC----CTCCTGAGCGAAATTTTCCAGC-AAGTTCTCGTTGACAAT 11998 Query 33983 TCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT 34042 |||||| || |||||||| ||||| || ||| | ||| | ||||| | | || Sbjct 11997 TCCATCGGACGCCGCAAAAAAAGCCAACACGTGTGAAAGGAAAGACCTTTCGCCAGAAGT 11938 Query 34043 TAGTTTAT---TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 34099 || | || |||| || || || || | | ||| | ||| || |||||||| Sbjct 11937 CAGGTGATTTGTCCAGTCGACGACGTCGTTCGCCAGATCTAATTCATCTGTCGTCCAAAA 11878 Query 34100 TGATGCCTCTGCCTTTTTATACAT 34123 ||||| || || | ||| ||||| Sbjct 11877 AGATGCTTCGGCTTGTTTGTACAT 11854 >seq434 Length=244965 Score = 105 bits (116), Expect = 8e-18 Identities = 160/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 63279 AAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCC 63337 || || ||||| ||||| || || || ||| |||||||||| ||| ||| || || || Sbjct 87307 AAAAGGTCAGGGATCCACAGCGCGTAGAAA-AGATCTCTTGCCCTAGATTCTTCCTTGCC 87365 Query 63338 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63397 |||||| | ||||||||| | | | ||||| |||||| ||||| | ||| || Sbjct 87366 ATGATTCTTCCGTAAATCGAGGAAATCAAACACATCAGCATGCCAGGGTTCGATGTAGAT 87425 Query 63398 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63457 || | |||| || || ||||||||||| ||||| | ||| | ||| ||| || ||| Sbjct 87426 CGCGAATGCTCCTGGTCGCTTGTTTCCTCCTTGATCGACGTAGCGAGCAGTGGCATCATA 87485 Query 63458 AACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACC 63502 | | | | |||||| | || || ||||| ||||||||| || Sbjct 87486 AGCACGAAGCATTGGCACTATGCCATTTGAATAACCATTGGTCCC 87530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629733409132320