Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq32 140 3e-28 seq179 109 5e-19 seq247 105 6e-18 >seq32 Length=1481398 Score = 140 bits (154), Expect = 3e-28 Identities = 310/462 (67%), Gaps = 11/462 (2%) Strand=Plus/Minus Query 11621 AACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAA 11680 |||| || ||| || ||||| || || || ||||||| ||| || || ||||| ||| Sbjct 1084277 AACAATAGACATGCGAAATCGGTGTGCAAGCCCTCGTCTCGACTAATAAGCTCATTGGAA 1084218 Query 11681 AATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCA 11740 ||||| | || ||||| | || ||||| || ||||| ||||| | ||||| || ||| Sbjct 1084217 AATGTCAGGCCAGGCATAAGACCACGTTTCTTGATCCAGAATATTGAGGCAAACGACCCA 1084158 Query 11741 GAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA---TACCTTG 11797 ||||||||||| || || ||||| ||||| || |||| | ||| | | | | Sbjct 1084157 GAAAAGAATATCCCTTCGACAGCAGCAAAGGCAACTAGACGTTCCGCGAAGGTTGAATGT 1084098 Query 11798 TTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCT 11857 ||| || ||||||||| |||||||||||||| || | ||| || || ||| Sbjct 1084097 TTGTCTGAAATCCATTTTAGAGCCCAATCAGCTTTGCGCTTGATGCAAGGAATGGTGTCT 1084038 Query 11858 ATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAA 11917 || |||| || | || || ||| ||| ||||| | || |||| Sbjct 1084037 ATGGCGTCGAAAAGGTGGGCCCGCTCCTGCGGATC-CTT---GATGTAGCCATCGATAAG 1083982 Query 11918 C----TATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCG 11973 | |||| |||| ||||| ||||| ||||| |||||||| |||||||| | || Sbjct 1083981 CAACGAATACGTTTCGGAATGGATATTCTCCATCATGATTTGAAAGCCATAGAAGGAACG 1083922 Query 11974 TGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACC 12033 ||||| | ||| || || || |||| ||||| | | ||||| |||||||| || Sbjct 1083921 CGCCTCGGGTACCTGCACTTCACCACAAAACCTTTCGACGAGGTTCTCGTTTACAATGCC 1083862 Query 12034 ATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTA 12075 ||| | ||||| || || || | ||| |||||| || Sbjct 1083861 ATCTGAGGCCGCAAAGAAAGCAAGAACATGCGATATAAAATA 1083820 >seq179 Length=47363 Score = 109 bits (120), Expect = 5e-19 Identities = 237/352 (67%), Gaps = 7/352 (2%) Strand=Plus/Minus Query 11621 AACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAA 11680 |||| | ||| || || || ||||| |||||| ||||| || || || ||||| || Sbjct 9370 AACAAAAGACATGCGAAGTCGGTATGTAGACCTTCATCTCTGCTGATAAGCTCATTGGAG 9311 Query 11681 AATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCA 11740 || || ||||| ||||||| || ||||| || | |||||| || || || || |||||| Sbjct 9310 AAAGTCAATCCTGGCATCACACCACGTTTCTTCAGCCAAAAAATGGCCGCGAAGGAACCA 9251 Query 11741 GAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA---TACCTTG 11797 ||||| || || || ||||| ||||| ||||| | |||| | ||| | Sbjct 9250 GAAAAAAAGATGCCTTCCACGCAGGCAAAGGCTACGAGGTGGCTTCCAAAGGCAACCGCG 9191 Query 11798 --TTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTT 11855 | | | |||||||| |||||||| || || |||| | ||| |||||||||| Sbjct 9190 GAATCTTCG--ATCCATTTCAATGCCCAATCCGCCTTTCTTTTGATGCACTCCATTGTTT 9133 Query 11856 CTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATA 11915 | | || | || | ||| | | |||| | ||| ||||| || || || | || Sbjct 9132 CAAGCGCATCGAAGAGATGTAATCGTTCTCGGGTGTCTGCAACATAGGTGTCGATGAGTA 9073 Query 11916 AACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAA 11967 || |||| |||| ||||| | ||||| || || ||||| || || || Sbjct 9072 AAGAATACGTTTCGGAATGGACGTTTTCGATCATAATCTGAAAACCGTAAAA 9021 >seq247 Length=45445 Score = 105 bits (116), Expect = 6e-18 Identities = 117/155 (75%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 11621 AACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAA 11680 |||| || ||| ||||| || ||| | ||||||||||| || |||||||| || ||| Sbjct 37324 AACAATAGACAGGCAAAGTCCGTATGAAGTCCTTCGTCTCTGCTGATTAGTTCGTTCGAA 37383 Query 11681 AATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCA 11740 || ||||| || ||||| || || ||||| || |||||||| | || ||||| || || Sbjct 37384 AAAGTTAAGCCTGGCAT-AAGCCCCGTTTCTTAATCCAAAAGACTGCTGCAAACGATCCG 37442 Query 11741 GAAAAGAATATTCCCTCCACAGCTGCAAATGCTAC 11775 || ||||| || || |||||| ||||| || || Sbjct 37443 GAGAAGAAAATGCCTTCCACACACGCAAAGGCAAC 37477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468462169947360