Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq32 147 3e-30 seq1000 116 5e-21 seq434 96.9 5e-15 seq247 96.9 5e-15 >seq32 Length=1481398 Score = 147 bits (162), Expect = 3e-30 Identities = 310/460 (67%), Gaps = 7/460 (2%) Strand=Plus/Minus Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208 |||| | ||||||||||||| ||| | |||||||||| |||||| | || |||||| Sbjct 1084277 AACAATAGACATGCGAAATCGGTGTGCAAGCCCTCGTCTCGACTAATAAGCTCATTGGAA 1084218 Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 || || || || ||||| || ||||| || || | ||| ||||| || ||||| || ||| Sbjct 1084217 AATGTCAGGCCAGGCATAAGACCACGTTTCTTGATCCAGAATATTGAGGCAAACGACCCA 1084158 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA--- 36325 |||||||| || ||||| || || |||||||||| || | || | | | | Sbjct 1084157 GAAAAGAATATCCCTTCGACAGCAGCAAAGGCAACTAGACGTTCCGCGAAGGTTGAATGT 1084098 Query 36326 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 |||| ||||| ||| |||||||||| || || || | ||||| || || ||| Sbjct 1084097 TTGTCTGAAATCCATTTTAGAGCCCAATCAGCTTTGCGCTTGATGCAAGGAATGGTGTCT 1084038 Query 36386 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAA 36443 || || | || || | | || | ||| || | || ||| || | || Sbjct 1084037 ATGGCGTCGAAAAGGTGGGCCCGCTCCTGCGGATCCTTGATGTAGCCATCGATAAGCAAC 1083978 Query 36444 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAG 36503 || |||| |||| ||||| || || || || |||||||| || ||||| | | | Sbjct 1083977 GA--ATACGTTTCGGAATGGATATTCTCCATCATGATTTGAAAGCCATAGAAGGAACGCG 1083920 Query 36504 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 36563 |||||| | ||| ||||| |||||| | ||| | | || || || || || || | Sbjct 1083919 CCTCGGGTACCTGCACTTCACCACAAAACCTTTCGACGAGGTTCTCGTTTACAATGCCAT 1083860 Query 36564 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 36603 | ||| ||||| || || | ||||| ||||||||| Sbjct 1083859 CTGAGGCCGCAAAGAAAGCAAGAACATGCGATATAAAATA 1083820 >seq1000 Length=18647 Score = 116 bits (128), Expect = 5e-21 Identities = 227/331 (69%), Gaps = 7/331 (2%) Strand=Plus/Minus Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208 |||| ||| || ||||| ||| || || |||||||| | ||| || ||||| ||||| Sbjct 12410 AACAGCAAGCACGCGAAGTCGGTATGGAGGCCCTCGTCACAACTGATCAATTCATTGGAG 12351 Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 || || | ||| ||||| || || ||||| || | |||||| || | |||||||| || Sbjct 12350 AAAGTCAATCCAGGCATGAGCCCTCGCTTCTTGATCCAAAAGATAGCTGCAAATGAGCCG 12291 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAACCG-GCA 36325 ||||||||||| ||||| || | ||| || | ||| | ||| | | |||| | Sbjct 12290 GAAAAGAAAATGCCTTCAACACAGGAAAATGCCAAAAGACGCTCAGCGAACGACCGCGAG 12231 Query 36326 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 | ||| ||||| | ||||| || |||||||| || || ||||||| || || Sbjct 12230 CGGTCGGTAATCCATGTCATCGCCCATTCTGCCTTCTTCTTCACGCAAGGCACAGTTTCG 12171 Query 36386 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAA 36443 ||||| || || || || || || || ||| | | || || || || | || Sbjct 12170 ATAGCGTTGAAAAGTAAGGCCTTCTCCTTGGGATCGGTGATGTAGGTGTCGATTAACAAG 12111 Query 36444 GACTATACATTTCCGAATGAATGTTTTCAAT 36474 || ||| |||| ||||||| |||||||| Sbjct 12110 GAGTAT--GTTTCAGAATGAACATTTTCAAT 12082 >seq434 Length=244965 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 66072 AAGAGATCAGGAATCCAAAGAGC-TATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCC 66130 || || ||||| ||||| || || || ||| | |||||| | ||| ||| || || || Sbjct 87307 AAAAGGTCAGGGATCCACAGCGCGTAGAAA-AGATCTCTTGCCCTAGATTCTTCCTTGCC 87365 Query 66131 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATAT 66190 |||||| | ||||||||| | | | |||| |||||| ||||| | ||| || Sbjct 87366 ATGATTCTTCCGTAAATCGAGGAAATCAAACACATCAGCATGCCAGGGTTCGATGTAGAT 87425 Query 66191 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 66250 || | |||| || || ||||||||||| ||||| | ||| | ||| ||| || ||| Sbjct 87426 CGCGAATGCTCCTGGTCGCTTGTTTCCTCCTTGATCGACGTAGCGAGCAGTGGCATCATA 87485 Query 66251 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCC 66295 | | | | |||||| | || ||||| || |||||||||||| Sbjct 87486 AGCACGAAGCATTGGCACTATGCCATTTGAATAACCATTGGTCCC 87530 >seq247 Length=45445 Score = 96.9 bits (106), Expect = 5e-15 Identities = 357/548 (65%), Gaps = 25/548 (5%) Strand=Plus/Plus Query 36173 TGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 36232 || || || |||||||| || |||| |||||| ||||| || | || ||||| || || Sbjct 37348 TGAAGTCCTTCGTCTCTGCTGATTAGTTCGTTCGAAAAAGTTAAGCCTGGCATAAGCCC- 37406 Query 36233 CGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCC 36292 || || |||| |||||| | | ||||| ||||| || |||||||| ||||| || | Sbjct 37407 CGTTTCTTAATCCAAAAGACTGCTGCAAACGATCCGGAGAAGAAAATGCCTTCCACACAC 37466 Query 36293 GCAAAGGCAATAAGTCTCTCTCCATAACCGGC--ACTG--TCATGTATCCACTTTTGAGC 36348 |||||||||| | | || | || ||| | || |||| ||||| || || Sbjct 37467 GCAAAGGCAACCAAACGTTCGGGA-AAGAGGCGGATTGGATCATTAATCCATTTCAATGC 37525 Query 36349 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt 36408 ||| | || || | | | ||| || || ||||| ||||| || |||||| | Sbjct 37526 CCAGTTCGCTTTTTCCTGGATACAGGGAATAGTCTCGATAGCGTTGAAGAGACGGGCCCG 37585 Query 36409 ttCATTACTATCTTTAACATATGTATCAATCAA--AAGACTATACATTTCCGAATGAATG 36466 ||| | || || || ||| ||||| ||||| || ||| | || || |||| Sbjct 37586 TTCCGTGCTGTCACGAATATAGGTATCTATCAAGGTCGAATATGC--CTCGGAGTGAACA 37643 Query 36467 TTTTCAATGGCCAT---TTGAAATCCGTAGAAACATCTAGCCTC---GGTAATCTGTACT 36520 ||||| || ||| ||| || ||||| || | ||||| || | | | | Sbjct 37644 TTTTCGAT---CATTGATTGGAAACCGTAAAAGGCACGGGCCTCCCAGGGA--CCG-ATC 37697 Query 36521 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 36580 ||| | | || ||||| |||||||| || || || ||||| |||||| || || Sbjct 37698 TCTTGAGAGAACCGTTCCAGCAAATTTTCGTTAACGATGCCGTCCGAGGCTGCGAAGAAG 37757 Query 36581 GCCAATACATGTTTTATAAAATAT---TTTTCGTTTGGTGTTAGTTTATTCCAATCATTG 36637 |||| |||||| | ||||| | | ||||| | | || | ||| || Sbjct 37758 GCCAGCACATGTGACAAAAAATGTCTGTCATCGTTCGACAGACGGTTCTCCCAGTCGCCC 37817 Query 36638 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 36697 | |||| | | ||| | || ||||| ||||| ||||| ||||| ||||| |||||| Sbjct 37818 AAATCTGAACGAAGATCAAGCTCCTCCACGGTCCAGAATGACGCCTCCGCCTTCTTATAC 37877 Query 36698 ATATTCCA 36705 || | ||| Sbjct 37878 ATCTGCCA 37885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658084818750960