Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq5464 95.1 1e-14 seq2682 86.0 5e-12 >seq5464 Length=12129 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 21282 TACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGG 21341 ||||| ||||||||||||| |||||| || || || || || |||||||| ||||| | Sbjct 11376 TACTCTGCCCCAAAATGTCGCCACTGAAATCCATAGACAGGACCCAGATCTCCCTCCCTC 11317 Query 21342 CGGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTT 21401 || | | || || | | | || || ||||| || |||| | ||||| ||||| Sbjct 11316 CGATGTGCCAACCCGCGTCCATCTAAGAACGCGCGCGAGCCGTTTCCATCCCAGATTTTC 11257 Query 21402 ACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCC 21461 ||||| ||| |||| || |||||||| ||||| ||||||||| || | |||| Sbjct 11256 ACGCCCTTCTTCGAGAGTTGCGTTGAGTCGGTCGAGCCATGGATAAACCAGAGTAGCTCC 11197 Query 21462 TC 21463 || Sbjct 11196 TC 11195 >seq2682 Length=6576 Score = 86.0 bits (94), Expect = 5e-12 Identities = 129/178 (72%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 20924 CAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTG-CACAAAGTCTC 20982 ||| | ||| ||||||| | |||||||||||||| ||| || || ||||| || Sbjct 6263 CAGTGCATCGACGTGGTCCCTATAAACGTGGGCGTC-CCCGAGCTGAATCACAAGTTCGT 6205 Query 20983 CCGGGGTCAG-GCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATG 21041 || |||| ||| || ||||| || |||| | ||| ||||| || ||| |||||| Sbjct 6204 GCGCC-TCAGTGCCAGTTACGTGCGCAATCATGTGCGTGAGGAGCGCATAGGATGCGATG 6146 Query 21042 TTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCT 21099 || || |||| ||||| || | ||| || || | ||| |||| | |||||||||||| Sbjct 6145 TTGAAAGGGATGCCGAGCCCAAGGTCTGCTGAGCGCTGATACATCAGGCAGGACAGCT 6088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427720246617120