Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq179 105 5e-18 seq32 100 2e-16 seq247 87.8 1e-12 >seq179 Length=47363 Score = 105 bits (116), Expect = 5e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 22744 CTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTC 22803 ||| | |||||||| || |||||| || | |||||||| || || |||||||| || Sbjct 9213 CTCGTAGCCTTTGCCTGCGTGGAAGGCATCTTTTTTTCTGGTTCCTTCGCGGCCATTTTT 9272 Query 22804 TGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGT 22863 ||||||||||||||| | |||||||| ||| | || ||||| ||| | || ||| | Sbjct 9273 TGGCTGAAGAAACGTGGTGTGATGCCAGGATTGACTTTCTCCAATGAGCTTATCAGCAGA 9332 Query 22864 GACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGtt 22901 || ||||||||||| ||||| || ||| | |||| Sbjct 9333 GATGAAGGTCTACATACCGACTTCGCATGTCTTTTGTT 9370 >seq32 Length=1481398 Score = 100 bits (110), Expect = 2e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||| ||||| |||||||||||| || | || || || || || ||| |||| |||||| Sbjct 1082191 TGGCGTTTGCTGCTGTTGAAGGCATCTTCTTCTCGGGCTCTTTCGCGTCCATCTTCTGGA 1082132 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 ||||||| || | ||||| || || | |||||||| ||| | |||||||| |||| Sbjct 1082131 TGAAGAAGCGAGGCTTGATGCCTGGCCTGACTTTTTCCAATGAGCTCATTAGCCGCGACG 1082072 Query 22868 AAGGTCTACACTGTGACTTTGCTTG 22892 |||| | ||| |||||||| || Sbjct 1082071 AAGGAATGCACACCGACTTTGCATG 1082047 Score = 98.7 bits (108), Expect = 7e-16 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 22740 ACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCAT 22799 |||||| | |||||||| ||||| ||||| | | ||||||||||| ||||| | || Sbjct 1084116 ACGTCTAGTTGCCTTTGCTGCTGTCGAAGGGATATTCTTTTCTGGGTCGTTTGCCTCAAT 1084175 Query 22800 ATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAG 22859 ||||||| | ||||||||| || ||||| || || | |||||||| ||| | ||||| Sbjct 1084176 ATTCTGGATCAAGAAACGTGGTCTTATGCCTGGCCTGACATTTTCCAATGAGCTTATTAG 1084235 Query 22860 CCGTGACGAAGG 22871 || ||||| || Sbjct 1084236 TCGAGACGAGGG 1084247 >seq247 Length=45445 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 23047 TTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAACGTTGCCAAT 23106 ||||| || ||||| ||||| || || ||||| | ||||||| || ||||||| || Sbjct 37132 TTTGTGGCGGATCGTCTGCTTGAAGCGCTGGGAGAATCAAAGATTTACCACGTTGCGAAC 37073 Query 23107 CCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTCTTTGA 23159 || |||||||||||||||| ||| | || ||||| |||||||| ||||| Sbjct 37072 CCCTTTGATTTCATGGATATGATTTCGCTGGAGGGTAAGACAAACTTTTTTGA 37020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356187170961682