Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq179 89.7 5e-13 seq32 87.8 2e-12 seq9840 86.0 6e-12 >seq179 Length=47363 Score = 89.7 bits (98), Expect = 5e-13 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 52870 GACGCTTTACCCGTATCATTGTTGGGCATGAACGC-GACCATGATGTGCGAGTACATCGA 52928 || || || |||||| | || | || |||||||| |||| | ||| ||||||||| Sbjct 9507 GATGCGTTGCCCGTAGCTCTGATCGGTATGAACGCCGACC-TCATGAAACGGTACATCGA 9565 Query 52929 GTTTGTTGCGGACAGACTGTT-GATGCAGCTCGGTCAGCCGAAATACTATAATGCGCGTA 52987 |||||| || ||||||||||| | ||| |||||| | |||| ||| ||| || | Sbjct 9566 GTTTGTGGCTGACAGACTGTTAGCTGC-GCTCGGCCTTTCGAAGCACTTCCATG-TCGAA 9623 Query 52988 ACCCCTTTT-CGTTTATGAACAACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGA 53046 | ||||||| || ||| ||| || || ||||| || || || |||||||| |||| | Sbjct 9624 AACCCTTTTGACTTCATGGACATGATCTCCCTCGAAGGAAAGACCAACTTTTTTGAGAAA 9683 Query 53047 CGTGTGGGCGAGTA 53060 || || | |||||| Sbjct 9684 CGGGTCGCCGAGTA 9697 >seq32 Length=1481398 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/227 (70%), Gaps = 8/227 (4%) Strand=Plus/Minus Query 52550 TTCCGTGTGT---GCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAAC-GACAAA 52605 |||||||||| |||||| || || |||||| |||| |||||| || ||| Sbjct 1082269 TTCCGTGTGTCAAGCGCAA---GGCAGACTGGGCACTGAACTGGATCTCCGACCGACGGT 1082213 Query 52606 GCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGT 52665 | ||||||| ||||| |||| ||||||||| || ||||| | || || ||||| Sbjct 1082212 -CAACTTTTGGTGAACGCTTGGTGGCGTTTGCTGCTGTTGAAGGCATCTTCTTCTCGGGC 1082154 Query 52666 AGTTTTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGC 52725 ||| ||| | || || | || || | ||| | ||||| ||||| || ||| | Sbjct 1082153 TCTTTCGCGTCCATCTTCTGGATGAAGAAGCGAGGCTTGATGCCTGGCCTGACTTTTTCC 1082094 Query 52726 AACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTG 52772 || ||| | || |||||||||||||||||||| || ||||| || Sbjct 1082093 AATGAGCTCATTAGCCGCGACGAAGGAATGCACACCGACTTTGCATG 1082047 >seq9840 Length=425 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/202 (71%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 139567 CGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA--GTCTTCGAGCTGTTTA 139624 ||| ||||| || || ||||| ||||| | || |||| ||| ||||| || || Sbjct 231 CGTTGACTCCTTCTGGATGTTGTAATCAGAAAGAGT--TCGACCGTCCTCGAGTTGCTTG 174 Query 139625 CCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGT 139684 || || | || || || |||||||||||||| ||||| || || || ||| | |||| Sbjct 173 CCGGCGAAAATTAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTATCC-TGAATCTTTGC 115 Query 139685 TTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAA 139743 || | | || | ||||||| | |||||| || | || | ||||||||||||||| Sbjct 114 CTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCCAGCGTGATCGTCTTGCCGGTCAA 55 Query 139744 CGTTTTTACGAATATTTGCATA 139765 || || || || || |||||| Sbjct 54 TGTCTTCACAAAAATCTGCATA 33 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495997688644800