Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq925 159 3e-34 seq32 158 1e-33 seq179 113 4e-20 seq1000 93.3 4e-14 >seq925 Length=43645 Score = 159 bits (176), Expect = 3e-34 Identities = 302/435 (69%), Gaps = 12/435 (3%) Strand=Plus/Plus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 |||||| ||||| ||||| |||||||||| || ||||| ||||||| || | || Sbjct 13684 ACACGCGAAATCTGTGTGAAGACCCTCATCTCGGCTGATAAGCTCGTTTGCGAACGATAG 13743 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAA 13990 |||||||||||| || | ||| || |||||||| || || || ||||| ||||||||||| Sbjct 13744 TCCTGGCATCAAACCCCTTTTCTTCAACCAAAAGATCGCGGCGAATGAGCCGGAAAAGAA 13803 Query 13991 TATTCCCTCAACTGCA-GCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCG 14049 || || || || ||| || || || | |||||||| || |||| | || | || | Sbjct 13804 AATCCCTTCTAC-GCATGCGAAAGCCAACAATCGTTCACCGAACGTTCTTTCCTCGTCAG 13862 Query 14050 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCAT 14109 |||||| | |||||| || | |||||| || | || |||||||| || |||| Sbjct 13863 TTATCCAAGTCAAAGCCCAATCTGCTTTTTTCTTCACGCAAGGAATTGTTTCCATCGCAT 13922 Query 14110 TAAATAAAT--ATTCCTTCTCTTTAGTACTTGAAATGTATGT--ATCAATAAGTAAGCTA 14165 | |||| | ||| ||| | | || ||||| || ||| ||||| ||| | | Sbjct 13923 TGAATAGTTCGCTTCTTTCGTTGTCGTCCTTGATATAACTGTCGATCAA-AAGCGA---A 13978 Query 14166 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCC 14225 |||| ||| ||||| | |||||| || | |||||| || || ||| | | |||||| Sbjct 13979 TACACTTCCGAGTGGACGTTTTCGATCATGAACTGAAAGCCGTAGAAGTAACGGGCTTCC 14038 Query 14226 GACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14284 | ||||| | | ||| | |||| |||| || || || || || ||||| Sbjct 14039 AAAGGGCCGACTTCTTGCGCAAAGT-TTTCCACCAAGTTCTCGTTCACGATTCCATCGGA 14097 Query 14285 AGCTGCAAAAAATGC 14299 ||||||||||| || Sbjct 14098 TGCTGCAAAAAAAGC 14112 >seq32 Length=1481398 Score = 158 bits (174), Expect = 1e-33 Identities = 379/567 (67%), Gaps = 15/567 (3%) Strand=Plus/Minus Query 13868 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13927 || ||| || ||||| || | |||||| |||| ||||||||| || || |||||||| Sbjct 1084272 TAGACATGCGAAATCGGTGTGCAAGCCCTCGTCTCGACTAATAAGCTCATTGGAAAATGT 1084213 Query 13928 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAA 13987 | || ||||| | || ||||| || | ||| ||||||| ||||| ||||| ||||| Sbjct 1084212 CAGGCCAGGCATAAGACCACGTTTCTTGATCCAGAATATTGAGGCAAACGACCCAGAAAA 1084153 Query 13988 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14047 |||||| || || || |||||||| || | || ||||| | || | || | ||||| Sbjct 1084152 GAATATCCCTTCGACAGCAGCAAAGGCAACTAGACGTTCCGCGAAGGTTGAATGTTTGTC 1084093 Query 14048 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14107 || ||||||||| |||||| |||| ||| || || || || || || || || Sbjct 1084092 TGAAATCCATTTTAGAGCCCAATCAGCTTTGCGCTTGATGCAAGGAATGGTGTCTATGGC 1084033 Query 14108 ATTAAATAAATATTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTA 14165 | || | | || ||| | | | |||| ||||| ||| ||||| || | Sbjct 1084032 GTCGAAAAGGTGGGCCCGCTCCTGCGGATCCTTG--ATGTAGCCATCGATAAGCAACGAA 1083975 Query 14166 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCC 14225 ||| |||| || || || || ||||| || ||||| ||||| ||| | | || || Sbjct 1083974 TACGTTTCGGAATGGATATTCTCCATCATGATTTGAAAGCCATAGAAGGAACGCGCCTCG 1083915 Query 14226 G--ACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14283 | ||| || ||||| |||| |||||| | | || || || || || ||||| Sbjct 1083914 GGTACC--TGCACTTCACCACAAAACCTTTCGACGAGGTTCTCGTTTACAATGCCATCTG 1083857 Query 14284 TAGCTGCAAAAAATGC--CAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTT 14341 || ||||| || || || ||| | ||||| || |||| |||| |||||| || Sbjct 1083856 AGGCCGCAAAGAAAGCAAGAACATGCGAT--ATAAAATACCGCTCATCATGGTTGAGATT 1083799 Query 14342 ---TTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGC 14398 ||||| || || || | ||||| || | ||| ||| ||||||| || || Sbjct 1083798 GAAGTTCCAGTCCACGAAGTCATGGGAAAGGTCAAGTTCTTCAGCTGTCCAGAATGAGGC 1083739 Query 14399 GACAGCTTTTTTATACATTACCCATAT 14425 |||||| || || | | |||||| Sbjct 1083738 TTGAGCTTTCTTGTAGAATTGCCATAT 1083712 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 13905 CTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAAT 13964 ||||| || || || ||||| || | || |||||||| ||||| || || | ||| || Sbjct 1082080 CTAATGAGCTCATTGGAAAAAGTCAGGCCAGGCATCAAGCCTCGCTTCTTCATCCAGAAG 1082139 Query 13965 ATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGT 14024 || | || || || || || ||||| || || ||||| ||||||||||| | || ||| Sbjct 1082140 ATGGACGCGAAAGAGCCCGAGAAGAAGATGCCTTCAACAGCAGCAAACGCCACCAAGCGT 1082199 Query 14025 TCTCCAAA 14032 || ||||| Sbjct 1082200 TCACCAAA 1082207 >seq179 Length=47363 Score = 113 bits (124), Expect = 4e-20 Identities = 236/345 (68%), Gaps = 10/345 (3%) Strand=Plus/Minus Query 13886 ATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCC 13945 ||| || || |||||||| || ||||| || || || || || ||||||||||||| || Sbjct 9347 ATGTAGACCTTCATCTCTGCTGATAAGCTCATTGGAGAAAGTCAATCCTGGCATCACACC 9288 Query 13946 TCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGC 14005 ||||| || | |||||| || || || || || || ||||| || || || || || || Sbjct 9287 ACGTTTCTTCAGCCAAAAAATGGCCGCGAAGGAACCAGAAAAAAAGATGCCTTCCAC-GC 9229 Query 14006 A-GCAAACGCTATTAATCGTTCTCCAAA--CGATGCTTTTTTGTTCGATATCCATTTTCT 14062 | ||||| |||| | | |||||| | | | |||| |||||||| Sbjct 9228 AGGCAAAGGCTACGAGGTGGCTTCCAAAGGCAACCGCGGAATCTTCG--ATCCATTTCAA 9171 Query 14063 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA--TAT 14120 ||||| || | ||| |||| || | ||||||||||||| |||| || | | || Sbjct 9170 TGCCCAATCCGCCTTTCTTTTGATGCACTCCATTGTTTCAAGCGCATCGAAGAGATGTAA 9111 Query 14121 TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 14180 || ||||| || || || || || || || ||||| |||| |||| || || Sbjct 9110 TCGTTCTC--GGGTGTCTGCAACATAGGTGTCGATGAGTAAAGAATACGTTTCGGAATGG 9053 Query 14181 ATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCC 14225 | |||||| || ||||||||||| ||||| | | ||||||| Sbjct 9052 ACGTTTTCGATCATAATCTGAAAACCGTAAAACGAGCGAGCTTCC 9008 >seq1000 Length=18647 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || ||||| || || ||| |||||||| || | ||| || | ||| || || || || Sbjct 12404 AAGCACGCGAAGTCGGTATGGAGGCCCTCGTCACAACTGATCAATTCATTGGAGAAAGTC 12345 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988 ||||| ||||| | ||||| || || | |||||| || || |||||||| ||||||||| Sbjct 12344 AATCCAGGCATGAGCCCTCGCTTCTTGATCCAAAAGATAGCTGCAAATGAGCCGGAAAAG 12285 Query 13989 AATATTCCCTCAAC 14002 || || || ||||| Sbjct 12284 AAAATGCCTTCAAC 12271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479663872359600