Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq2021 104 2e-17 seq9840 86.0 5e-12 >seq2021 Length=7336 Score = 104 bits (114), Expect = 2e-17 Identities = 150/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 42902 CCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCA 42961 |||| || | ||||||||||| || | ||||||||| ||||| ||||| |||| |||| Sbjct 265 CCAAGTGAAGGGTGCTCTCCTTCTGAATATTGTAATCCGACAAAGTACGCCCGTCCTCCA 206 Query 42962 ATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG- 43020 | || || |||||||| || | ||||| || || | || | || || || || ||| Sbjct 205 ACTGCTTCCCGGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATC-CTGA 147 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| | | || || || ||| || || || |||||| || | ||| || || ||| Sbjct 146 ATCTTCGCCTTCACATTGTCAATCGTATCCGAAGACTCGACTTCCAACGTGATCGTCTTT 87 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | ||| ||||| || |||||||| Sbjct 86 CCCGTCAAAGTCTTCACGAAGATTTGCAT 58 >seq9840 Length=425 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | || | ||||| || |||||| || | |||||||| || Sbjct 261 GCCACCACGGAGGCGAAGAACGAGATGGAGCGTTGACTCCTTCTGGATGTTGTAATCAGA 202 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || |||| || | ||| |||||||| ||||| | ||||| ||||||| || Sbjct 201 AAGAGTTCGACCGTCCTCGAGTTGCTTGCCGGCGAAAATTAGGCGCTGCTGATCGGGAGG 142 Query 43002 CACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | || || || || |||| || | ||||| || | | |||||| || ||| | Sbjct 141 AATGCCCTCCTTATC-CTGAATCTTTGCCTTGACATTGTCGATGGTGTCGGAAGACTCCA 83 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | ||| || || || ||||| | || ||||||||||| ||||| Sbjct 82 CTTCCAGCGTGATCGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCAT 34 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381319894908252