Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq9840 87.8 2e-12 seq32 84.2 2e-11 >seq9840 Length=425 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | || | ||| | ||| | || || || || || ||||||||||| Sbjct 261 GCCACCACGGAGGCGAAGAACGAGATGGAGCGTTGACTCCTTCTGGATGTTGTAATCAGA 202 Query 143017 CATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 | || |||| ||| |||||||| || || || | || || || |||||||||||| Sbjct 201 AAGAGT--TCGACCGTCCTCGAGTTGCTTGCCGGCGAAAATTAGGCGCTGCTGATCGGGA 144 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || ||||| || || || ||| ||| || | | || | ||||| | | || Sbjct 143 GGAATGCCCTCCTTATCCTGAATCTTTGCCTTGACATTGTCGATGGTGTCGGAAGACTCC 84 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| | || | |||||||||||||||||| || || || || |||||| Sbjct 83 ACTTCCAGCGTGATCGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCATA 33 >seq32 Length=1481398 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 50404 ACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGC 50463 ||||| | ||||| || ||||||||||| |||||||| | || || || || Sbjct 1082210 ACTTTTGGTGAACGCTTGGTGGCGTTTGCTGCTGTTGAAGGCATCTTCTTCTCGGGCTCT 1082151 Query 50464 TTTGCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAAC 50523 || || |||| || | || || | |||| | ||||| ||||| || ||| ||| Sbjct 1082150 TTCGCGTCCATCTTCTGGATGAAGAAGCGAGGCTTGATGCCTGGCCTGACTTTTTCCAAT 1082091 Query 50524 GAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTG 50567 ||| | ||| |||||||||||||||||||| |||||||| || Sbjct 1082090 GAGCTCATTAGCCGCGACGAAGGAATGCACACCGACTTTGCATG 1082047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506946624850080