Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1000 127 3e-24 seq247 100 4e-16 seq32 89.7 8e-13 >seq1000 Length=18647 Score = 127 bits (140), Expect = 3e-24 Identities = 361/546 (66%), Gaps = 14/546 (3%) Strand=Plus/Plus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 |||| ||||||||| | || | || || ||||||||| || || | |||||| | Sbjct 11848 TGGGCCATGTACAAACAAGCCGAAGCATCTTTTTGGACGACAGATGAATTAGATCTGGCG 11907 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG----TTTATATC 125137 || ||| | ||| ||| | || ||||| ||| |||| || || | || Sbjct 11908 AACGACGTCGTCGACTGGACAAATCACCTGACTT---CTG-GCGAAAGGTCTTTCCTTTC 11963 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACG 125197 ||| | ||||| || ||||| | ||||||||||| |||||||| || || || | Sbjct 11964 ACACGTGTTGGCTTTTTTTGCGGCGTCCGATGGAATTGTCAACGAGAACTTGCTGGAAAA 12023 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTG-TCGTGCTTT-TACGGATTCCAAATCATG 125255 ||| |||| ||| | | | |||| | | | ||||| || | ||||| ||||| Sbjct 12024 TTTCGCTCAGGAGGTTTCGC--CGAGAGAAGCTTGGGCTTTCTATGCCTTCCAGGTCATG 12081 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG 125315 ||||| || || || || |||| ||||| | || |||| ||||| |||||| Sbjct 12082 ATTGAAAATGTTCATTCTGAAACATACTCCTTGTTAATCGACACCTACATCACCGATCC- 12140 Query 125316 CAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 ||| | || | | || || ||||| ||||| || ||||| | | || ||||| Sbjct 12141 CAAGGAGAAGGCCTTACTTTTCAACGCTATCGAAACTGTGCCTTGCGTGAAGAAGAAGGC 12200 Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 |||||| ||| ||||| ||| | | |||| ||| || | || |||| Sbjct 12201 AGAATGGGCGATGACATGGATTACCGACCGCTCGCGGTCGTTCGCTGAGCGTCTTTTGGC 12260 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAA 125494 ||| || || || ||||| |||||||| || ||||| || ||||||||| |||| Sbjct 12261 ATTTTCCTGTGTTGAAGGCATTTTCTTTTCCGGCTCATTTGCAGCTATCTTTTGGATCAA 12320 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 |||||| || |||||||| ||| |||| | || || || || | | |||||||| Sbjct 12321 GAAGCGAGGGCTCATGCCTGGATTGACTTTCTCCAATGAATTGATCAGTTGTGACGAGGG 12380 Query 125555 CCTACA 125560 ||| || Sbjct 12381 CCTCCA 12386 >seq247 Length=45445 Score = 100 bits (110), Expect = 4e-16 Identities = 332/502 (66%), Gaps = 17/502 (3%) Strand=Plus/Minus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCT--GT 125079 ||| | ||||| || ||||| |||| || || ||||| || || ||| | ||||| || Sbjct 37885 TGGCAGATGTATAAGAAGGCGGAGGCGTCATTCTGGACCGTGGAGGAGCTTGATCTTCGT 37826 Query 125080 CCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGC 125139 || || || ||| ||||||| ||| || | | ||| || | ||| | || | Sbjct 37825 TCA--GATTTGGGCGACTGGGAGAACCGTCTGTCGAACGATGACAGACATTTTTTGTCAC 37768 Query 125140 ACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGAT 125199 | | |||||||||| || | ||| || || ||||| ||||| ||| || || ||| | Sbjct 37767 ATGTGCTGGCCTTCTTCGCAGCCTCGGACGGCATCGTTAACGAAAATTTGCTGGAACGGT 37708 Query 125200 TCTCTCAAGAGTTGACCATTCCAGAG-GTGTCGTG-CTTTTACGGATTCCAAATCATGAT 125257 ||||||||||| | | | || | | | |||| ||||||||| |||||| ||||| Sbjct 37707 TCTCTCAAGAGAT--CGGTCCCTGGGAGGCCCGTGCCTTTTACGGTTTCCAATCAATGAT 37650 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCA 125317 || || || ||||| || || || || |||| || | || ||||| || | || Sbjct 37649 CGAAAATGTTCACTCCGAGGCATATTCGACCTTGATAGATACCTATATTCGTGA-CAGC- 37592 Query 125318 ACGTAA---ACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 ||| || | | | ||||| ||||| ||||| || | || | ||| | |||| || Sbjct 37591 ACGGAACGGGCCCGT-CTCTTCAACGCTATCGAGACTATTCCCTGTATCCAGGAAAAAGC 37533 Query 125375 TCAATGGGTGATTCGGTGGATCGATGA-CGACAAGTCTTCGTACGCCGACAGACTGGTGG 125433 | |||| | ||||| |||| | | | || | | |||| | |||| | Sbjct 37532 GAACTGGGCATTGAAATGGATTAATGATCCAATCCGCCTCTTTC-CCGAACGTTTGGTTG 37474 Query 125434 CATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCA 125493 | || || || || ||||| ||||| || || ||||| || |||||||| | | Sbjct 37473 CCTTTGCGTGTGTGGAAGGCATTTTCTTCTCCGGATCGTTTGCAGCAGTCTTTTGGATTA 37414 Query 125494 AGAAGCGCGGACTCATGCCCGG 125515 |||| || || || ||||| || Sbjct 37413 AGAAACG-GGGCTTATGCCAGG 37393 >seq32 Length=1481398 Score = 89.7 bits (98), Expect = 8e-13 Identities = 336/515 (65%), Gaps = 24/515 (5%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| |||||| |||| || |||||||| | || || | || || Sbjct 1082603 ATCTGGCAAATGTACAAGAAGGCTGAGGCGTCGTTTTGGACTGCAGAGGAAATGGACCTC 1082544 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || || || | | || ||| || || | | || | ||||| | || || || Sbjct 1082543 TCGAAAGATATTCATGACTGGACCACCCGCCTTAACGACAACGAGCGCCATTTCATCTCC 1082484 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 || | | || ||||| || | ||| ||||| || |||||||| || || || || || Sbjct 1082483 CATGTCCTCGCTTTCTTCGCAGCCTCGGATGGTATTGTCAACGAGAACCTTGTCGAG-CG 1082425 Query 125198 ATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCAT 125254 || || | ||| | ||| || | |||| ||| || || || || ||||||||||| Sbjct 1082424 CTTTTCCAACGAGGT--CCAAGTTGCCGAGGC-TCGATGTTTCTATGGCTTCCAAATCAT 1082368 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTA---CATTCGCGA 125311 ||| |||||| | ||||| || | ||| || || || |||| || || || Sbjct 1082367 GATGGAGAACATTCACTCAGAGACGTATTCGCTTCTCATCGACACCTATATCAAGGACGC 1082308 Query 125312 TCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA-- 125369 | | |||| | || || || |||| | || || | |||| | || || Sbjct 1082307 TGCCGAACGCGAGTAC---CTTTTCGACGCCGTGGAGACCATTCCGTGT----GTCAAGC 1082255 Query 125370 --AAGGCTCAATGGGTGATTCGGTGGATCGATGA-CGACAAGTCTTCGTACGCCGACAGA 125426 ||||| | |||| | |||||| || |||| ||| | | | || | Sbjct 1082254 GCAAGGCAGACTGGGCACTGAACTGGATCTCCGACCGAC-GGTCAACTTTTGGTGAACGC 1082196 Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 ||||||| || || || || || ||||||||||| ||||| ||| ||| ||||||| Sbjct 1082195 TTGGTGGCGTTTGCTGCTGTTGAAGGCATCTTCTTCTCGGGCTCTTTCGCGTCCATCTTC 1082136 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 ||| | |||||||| || | ||||| || ||||| Sbjct 1082135 TGGATGAAGAAGCGAGGCTTGATGCCTGGCCTGAC 1082101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740960138911440