Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq247 113 4e-20 >seq247 Length=45445 Score = 113 bits (124), Expect = 4e-20 Identities = 370/564 (66%), Gaps = 16/564 (3%) Strand=Plus/Plus Query 13142 AACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAA 13201 |||| | ||| ||||| || || | |||||| ||||| || ||||| ||||| ||| Sbjct 37324 AACAATAGACAGGCAAAGTCCGTATGAAGTCCTTCGTCTCTGCTGATTAGTTCGTTCGAA 37383 Query 13202 AATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC 13261 || |||| || ||||||||||| ||||| ||||||||||| | || |||||||| || Sbjct 37384 AAAGTTAAGCCTGGCATAAGCCC-CGTTTCTTAATCCAAAAGACTGCTGCAAACGATCCG 37442 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTT 13321 || || || || ||||| || ||||| || | ||| | ||| | | | || Sbjct 37443 GAGAAGAAAATGCCTTCCACACACGCAAAGGCAACCAAACGTTCGGGAAAGAGGCGGATT 37502 Query 13322 TTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT 13381 | | ||||| || |||||||| ||||||| | | ||| ||| | || Sbjct 37503 GGATCATTAATCCATTTCAATGCCCAGTTCGCTTTTTCCTGGATACAGGGAATAGTCTCG 37562 Query 13382 ATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAG 13441 || ||||| || | | |||| | ||||| |||||| ||||||||||| Sbjct 37563 ATAGCGTTGAAGAGACGGGCCCGTTCCGTGCTGTCACGAATATAGGTATCTATCAAGGTC 37622 Query 13442 CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCC 13501 ||| || || |||| |||||| ||| | ||||||||| ||||| | ||| Sbjct 37623 GAATATGCCTCGGAGTGAACATTTTCGATCATTGATTGGAAACCGTAAAAGGCACGGGCC 37682 Query 13502 T--CTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGT 13559 | | | ||| || || ||| | || | ||| || ||||||||||| || |||| Sbjct 37683 TCCCAGGGACC-GATCTCTTGAG-AGAACCGTTCCAGCAAATTTTCGTTAACGATGCCGT 37740 Query 13560 CACTAGCAGCaaaaaaaGCAAG--TATGTGCTTAATAAAttttttt--tCGTTTTCTGAC 13615 | || || || || || || ||||| || |||| | | | ||||| ||| Sbjct 37741 CCGAGGCTGCGAAGAAGGCCAGCACATGTG-ACAAAAAATGTCTGTCATCGTT---CGAC 37796 Query 13616 A-AC--TTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAA 13672 | || || ||| || |||||| | ||| | |||||| |||||||| || Sbjct 37797 AGACGGTTCTCCCAGTCGCCCAAATCTGAACGAAGATCAAGCTCCTCCACGGTCCAGAAT 37856 Query 13673 GAAGCAACAGCCTTCTTATACATC 13696 || || | ||||||||||||||| Sbjct 37857 GACGCCTCCGCCTTCTTATACATC 37880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430926228716988