Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq18 134 2e-27 seq5798 116 6e-22 seq3306 96.9 5e-16 seq3305 91.5 2e-14 >seq18 Length=146986 Score = 134 bits (148), Expect = 2e-27 Identities = 123/153 (80%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| ||| |||||| || |||||||| || ||||| ||||| ||||| Sbjct 36846 GCCAAGCGCCACCGCAAGAT-TCTTCGCGACAACATCCAGGGTATCACTAAGCCCGCTAT 36904 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || ||||||||||| || |||||| | ||||| | |||| || |||| Sbjct 36905 CCGTCGTCTCGCCCGTCGTGGTGGTGTGAAGCGTATTTCTGGTCTCATCTACGAGGAGAC 36964 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 |||| |||| ||||||||||||| ||| ||| Sbjct 36965 CCGTGGTGTTCTGAAGATCTTCCTTGAGAACGT 36997 Score = 129 bits (142), Expect = 9e-26 Identities = 122/153 (80%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| ||| |||||| || |||||||| || ||||| ||||| ||||| Sbjct 59039 GCCAAGCGCCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACGAAGCCCGCTAT 58981 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || ||||||||||| || |||||| | ||||| | |||| || |||| Sbjct 58980 TCGTCGTCTCGCCCGTCGTGGTGGTGTGAAGCGTATTTCTGGTCTCATCTACGAGGAGAC 58921 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 |||| |||| ||||||||||||| ||| ||| Sbjct 58920 CCGTGGTGTTCTGAAGATCTTCCTTGAGAACGT 58888 >seq5798 Length=2274 Score = 116 bits (128), Expect = 6e-22 Identities = 110/138 (80%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 || || |||||||| ||||| ||||| || ||||||||| ||||||| ||| |||| ||| Sbjct 378 GCCATTCGTCGTCTTGCTCGCCGTGGAGGTGTCAAGCGTATCTCTGGTTTGATCTACGAA 319 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGA-TGCTTTCCACTA 16605 || | ||||| ||| | |||||||||||| ||| || |||| ||| | | || | ||| Sbjct 318 GAAACTCGTGGCGTTCTCAAGATCTTCCTCGAGAATGTCATCCGTGACTCCGTTAC-CTA 260 Query 16606 TACCGAGCACGCTAAACG 16623 |||||||| |||||||| Sbjct 259 CACCGAGCATGCTAAACG 242 >seq3306 Length=8431 Score = 96.9 bits (106), Expect = 5e-16 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| || || || ||||||||||| || || |||||||| || |||||| | || Sbjct 6028 AGGCATCACTAAACCCGCCATCCGTCGTCTTGCCCGCCGTGGTGGTGTAAAGCGTATTTC 6087 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 ||| | |||||||||||| || | || | ||||| |||||| ||| || || | Sbjct 6088 TGGCCTCATCTATGAAGAGACACGCGGCGTCCTCAAGATTTTCCTCGAGAATGTCATTCG 6147 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAACG 16623 || || || ||||||||||| ||||| || Sbjct 6148 GGACTCTGTCACTTATACCGAGCATGCTAAGCG 6180 >seq3305 Length=8163 Score = 91.5 bits (100), Expect = 2e-14 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| || || || ||||||||||| || || |||||||| || |||||| | || Sbjct 6032 AGGCATCACTAAACCCGCCATCCGTCGTCTTGCCCGCCGTGGTGGTGTAAAGCGTATTTC 6091 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 ||| | |||| ||||||| || | || | ||||| |||||| ||| || || | Sbjct 6092 TGGCCTCATCTACGAAGAGACACGCGGCGTCCTCAAGATTTTCCTCGAGAATGTCATTCG 6151 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAACG 16623 || || || ||||||||||| ||||| || Sbjct 6152 GGACTCTGTCACTTATACCGAGCATGCTAAGCG 6184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79065422400942