Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq247 89.7 5e-13 seq1000 82.4 8e-11 >seq247 Length=45445 Score = 89.7 bits (98), Expect = 5e-13 Identities = 177/258 (69%), Gaps = 7/258 (3%) Strand=Plus/Plus Query 21467 AACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAA 21526 |||| | ||| ||||| || ||| | ||||| || || || |||| ||| || ||| Sbjct 37324 AACAATAGACAGGCAAAGTCCGTATGAAGTCCTTCGTCTCTGCTGATTAGTTCGTTCGAA 37383 Query 21527 AATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCT 21586 || ||||| || ||||| || || | || || | |||||| | || ||||| | ||| Sbjct 37384 AAAGTTAAGCCTGGCAT-AAGCCCCGTTTCTTAATCCAAAAGACTGCTGCAAACGATCCG 37442 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTC---ACCGTATGTAGAT 21643 || ||||||||||| || || ||||| ||||| || ||||| | | | | ||| Sbjct 37443 GAGAAGAAAATGCCTTCCACACACGCAAAGGCAACCAAACGTTCGGGAAAG-AGGCGGAT 37501 Query 21644 TCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTA 21703 | ||| |||||||| |||||| || || ||||| | ||||| ||| || Sbjct 37502 --TGGATCATTAATCCATTTCAATGCCCAGTTCGCTTTTTCCTGGATACAGGGAATAGTC 37559 Query 21704 TCAATAGCTTTTAAAAGA 21721 || ||||| || || ||| Sbjct 37560 TCGATAGCGTTGAAGAGA 37577 >seq1000 Length=18647 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 21467 AACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAA 21526 |||| ||| || || || || ||| | || || || | ||| || |||||||| || Sbjct 12410 AACAGCAAGCACGCGAAGTCGGTATGGAGGCCCTCGTCACAACTGATCAATTCATTGGAG 12351 Query 21527 AATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCT 21586 || || || || ||||| | |||| ||| || | |||||| || | ||||||| || Sbjct 12350 AAAGTCAATCCAGGCATGAGCCCTCGCTTCTTGATCCAAAAGATAGCTGCAAATGAGCCG 12291 Query 21587 GAAAAGAAAATGCCCTCAAC 21606 |||||||||||||| ||||| Sbjct 12290 GAAAAGAAAATGCCTTCAAC 12271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531829698160560