Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq925 156 5e-33 seq32 156 5e-33 seq434 102 1e-16 seq247 82.4 1e-10 >seq925 Length=43645 Score = 156 bits (172), Expect = 5e-33 Identities = 302/436 (69%), Gaps = 11/436 (3%) Strand=Plus/Plus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 || ||| |||||||| ||| |||||||| |||| || || || ||||| | |||| Sbjct 13681 CATACACGCGAAATCTGTGTGAAGACCCTCATCTCGGCTGATAAGCTCGTTTGCGAACGA 13740 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 ||||| ||||| | || | || || | |||||| || | |||||||| || ||||| Sbjct 13741 TAGTCCTGGCATCAAACCCCTTTTCTTCAACCAAAAGATCGCGGCGAATGAGCCGGAAAA 13800 Query 33420 GAAGATTCCTTCTACTGCA-GC-AAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---- 33473 ||| || |||||||| ||| || |||| ||| || || || || ||| | | Sbjct 13801 GAAAATCCCTTCTAC-GCATGCGAAAGCCAACAA-TCGTTCACCG-AACGTTCTTTCCTC 13857 Query 33474 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33533 |||| |||||| | ||||||||| || || || || || ||||| || ||||| || Sbjct 13858 GTCAGTTATCCAAGTCAAAGCCCAATCTGCTTTTTTCTTCACGCAAGGAATTGTTTCCAT 13917 Query 33534 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 33593 ||||| || || | | || |||| || || || | |||| | ||||||||||| Sbjct 13918 CGCATTGAATAGTTCGCTTCTTTCGTTGTCGTCCTTGATATAACTGTCGATCAAAAGCGA 13977 Query 33594 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33653 ||||| |||||| || | |||||| || | |||||| |||||||| | | || || Sbjct 13978 ATACACTTCCGAGTGGACGTTTTCGATCATGAACTGAAAGCCGTAGAAGTAACGGGCTTC 14037 Query 33654 GGTAATCTGTACTTC-TGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCAC 33712 | ||||| || |||| | |||| |||| || || ||||| ||||| || Sbjct 14038 CAAAGGGCCGACTTCTTGCGCAAAGT-TTTCCACCAAGTTCTCGTTCACGATTCCATCGG 14096 Query 33713 TGGCTGCAAAAAACGC 33728 ||||||||||| || Sbjct 14097 ATGCTGCAAAAAAAGC 14112 >seq32 Length=1481398 Score = 156 bits (172), Expect = 5e-33 Identities = 312/460 (68%), Gaps = 7/460 (2%) Strand=Plus/Minus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| | ||||||||||||| ||||| |||||||||| |||||| || || |||||| Sbjct 1084277 AACAATAGACATGCGAAATCGGTGTGCAAGCCCTCGTCTCGACTAATAAGCTCATTGGAA 1084218 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || || || ||||| || ||||| || || | ||| ||||| || || || || ||| Sbjct 1084217 AATGTCAGGCCAGGCATAAGACCACGTTTCTTGATCCAGAATATTGAGGCAAACGACCCA 1084158 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CG 33471 |||||||| || ||||| || ||||||||||||| || | || | | | Sbjct 1084157 GAAAAGAATATCCCTTCGACAGCAGCAAAGGCAACTAGACGTTCCGCGAAGGTTGAATGT 1084098 Query 33472 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33531 |||| ||||| ||| |||||||||| || || || | ||||| || || ||| Sbjct 1084097 TTGTCTGAAATCCATTTTAGAGCCCAATCAGCTTTGCGCTTGATGCAAGGAATGGTGTCT 1084038 Query 33532 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAA 33589 ||||| | || || | | || | ||| || | || |||||| | || Sbjct 1084037 ATGGCGTCGAAAAGGTGGGCCCGCTCCTGCGGATCCTTGATGTAGCCATCGATAAGCAAC 1083978 Query 33590 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33649 || |||| |||| ||||| || || || || || ||||| || ||||| | | | Sbjct 1083977 GA--ATACGTTTCGGAATGGATATTCTCCATCATGATTTGAAAGCCATAGAAGGAACGCG 1083920 Query 33650 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGT 33709 |||||| | ||| ||||| |||||| | ||| | | || || || || || || | Sbjct 1083919 CCTCGGGTACCTGCACTTCACCACAAAACCTTTCGACGAGGTTCTCGTTTACAATGCCAT 1083860 Query 33710 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 33749 | ||| ||||| || || | ||||| ||||||||| Sbjct 1083859 CTGAGGCCGCAAAGAAAGCAAGAACATGCGATATAAAATA 1083820 >seq434 Length=244965 Score = 102 bits (112), Expect = 1e-16 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 63228 AAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63286 || || ||||| ||||| || || || ||| |||||||| | ||| ||| || || || Sbjct 87307 AAAAGGTCAGGGATCCACAGCGCGTAGAAA-AGATCTCTTGCCCTAGATTCTTCCTTGCC 87365 Query 63287 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63346 |||||| | ||||||||| | | | ||||| |||||| ||||| | ||| || Sbjct 87366 ATGATTCTTCCGTAAATCGAGGAAATCAAACACATCAGCATGCCAGGGTTCGATGTAGAT 87425 Query 63347 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63406 || | |||| || || ||||||||||| ||||| | ||| | ||| ||| || ||| Sbjct 87426 CGCGAATGCTCCTGGTCGCTTGTTTCCTCCTTGATCGACGTAGCGAGCAGTGGCATCATA 87485 Query 63407 AACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACC 63451 | | | | |||||| | || || ||||| ||||||||| || Sbjct 87486 AGCACGAAGCATTGGCACTATGCCATTTGAATAACCATTGGTCCC 87530 >seq247 Length=45445 Score = 82.4 bits (90), Expect = 1e-10 Identities = 97/130 (75%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 33319 TGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 33378 || || || |||||||| || ||||||||||| ||||| || | || |||| || ||| Sbjct 37348 TGAAGTCCTTCGTCTCTGCTGATTAGTTCGTTCGAAAAAGTTAAGCCTGGCA-TAAGCCC 37406 Query 33379 CGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCA 33438 || || |||| |||||| | | || || ||||| || ||||| || ||||| || Sbjct 37407 CGTTTCTTAATCCAAAAGACTGCTGCAAACGATCCGGAGAAGAAAATGCCTTCCACACAC 37466 Query 33439 GCAAAGGCAA 33448 |||||||||| Sbjct 37467 GCAAAGGCAA 37476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622863927533040