Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq32 136 1e-26 seq925 122 2e-22 seq1000 120 8e-22 seq247 102 2e-16 >seq32 Length=1481398 Score = 136 bits (150), Expect = 1e-26 Identities = 168/229 (73%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 22419 CACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACG 22478 |||||||| | || ||| || || |||||||| || |||||||| | ||| Sbjct 1084041 CACCATTCCTTGCATCAAGCGCAAAGCTGATTGGGCTCTAAAATGGATTTCAGACAAACA 1084100 Query 22479 TTCA---TTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG 22535 |||| |||||||||||||| |||| ||||||| || ||||| || ||||||||||| Sbjct 1084101 TTCAACCTTCGCGGAACGTCTAGTTGCCTTTGCTGCTGTCGAAGGGATATTCTTTTCTGG 1084160 Query 22536 AGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTC 22595 | ||| |||| || ||| | || ||||||| ||||||| || || || ||||| Sbjct 1084161 GTCGTTTGCCTCAATATTCTGGATCAAGAAACGTGGTCTTATGCCTGGCCTGACATTTTC 1084220 Query 22596 AAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGT 22644 |||||| | ||||| ||||| ||||| | || |||||||| || ||| Sbjct 1084221 CAATGAGCTTATTAGTCGAGACGAGGGCTTGCACACCGATTTCGCATGT 1084269 Score = 89.7 bits (98), Expect = 1e-12 Identities = 146/207 (71%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 22441 AAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCA---TTCGCGGAACGTCTT 22497 |||||||| ||||| ||||| ||||| | | ||| ||| || | ||||| | Sbjct 1082252 AAGGCAGACTGGGCACTGAACTGGATCTCCGACCGACGGTCAACTTTTGGTGAACGCTTG 1082193 Query 22498 ATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG-CAATCTTTTG 22556 | || ||||||| ||||||||||| ||||| || || | ||| | | | ||||| || Sbjct 1082192 GTGGCGTTTGCTGCTGTTGAAGGCATCTTCTTCTCGGGCTC-TTTCGCGTCCATCTTCTG 1082134 Query 22557 GCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGA 22616 | | || || || | | ||||| || || || ||||| |||||| | |||||||| || Sbjct 1082133 GATGAAGAAGCGAGGCTTGATGCCTGGCCTGACTTTTTCCAATGAGCTCATTAGCCGCGA 1082074 Query 22617 TGAGGGTCTTCATACCGATTTTGCGTG 22643 || || | || ||||| ||||| || Sbjct 1082073 CGAAGGAATGCACACCGACTTTGCATG 1082047 >seq925 Length=43645 Score = 122 bits (134), Expect = 2e-22 Identities = 160/221 (72%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGA---ACAATGAACGTTCATTCGCGGAA 22491 ||||| || ||||||||||| ||| ||||| | || | ||| | | |||| ||| Sbjct 13896 AAGAAAAAAGCAGATTGGGCTTTGACTTGGATAACTGACGAGGAAAGAACGTTCGGTGAA 13837 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 || | | || || || || ||||| ||||||||||| || |||| || ||| Sbjct 13836 CGATTGTTGGCTTTCGCATGCGTAGAAGGGATTTTCTTTTCCGGCTCATTCGCCGCGATC 13777 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 |||||| | || ||| | | | ||||| || ||| |||| |||| ||| | || ||| Sbjct 13776 TTTTGGTTGAAGAAAAGGGGTTTGATGCCAGGACTATCGTTCGCAAACGAGCTTATCAGC 13717 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATA 22652 ||||||||||||||||| || ||||| ||||||||| |||| Sbjct 13716 CGAGATGAGGGTCTTCACACAGATTTCGCGTGTATGTTATA 13676 >seq1000 Length=18647 Score = 120 bits (132), Expect = 8e-22 Identities = 160/219 (73%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAA---CGTTCATTCGCGGAA 22491 ||||| |||||||| |||||| ||| |||||| | | | || || ||||| || Sbjct 12190 AAGAAGAAGGCAGAATGGGCGATGACATGGATTACCGACCGCTCGCGGTCGTTCGCTGAG 12249 Query 22492 CGTCTTATTGCATTTGC-TGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAAT 22550 |||||| | |||||| | |||| ||||||||||||||||||| || ||||| || || Sbjct 12250 CGTCTTTTGGCATTTTCCTGTG-TTGAAGGCATTTTCTTTTCCGGCTCATTTGCAGCTAT 12308 Query 22551 CTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAG 22610 ||||||| | || || || | | ||||| || | || || || ||||| || || || Sbjct 12309 CTTTTGGATCAAGAAGCGAGGGCTCATGCCTGGATTGACTTTCTCCAATGAATTGATCAG 12368 Query 22611 CCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCT 22649 | || ||||| || |||||||| || ||||| |||| Sbjct 12369 TTGTGACGAGGGCCTCCATACCGACTTCGCGTGCTTGCT 12407 >seq247 Length=45445 Score = 102 bits (112), Expect = 2e-16 Identities = 147/200 (74%), Gaps = 8/200 (4%) Strand=Plus/Minus Query 22450 TGGGCGCTGAAATGGATGAACAATGAA---CGT-TCATTCGCGGAACGTCTTATTGCATT 22505 ||||| |||||||||| || || | || || ||| || ||||| | |||| || Sbjct 37528 TGGGCATTGAAATGGATTAATGATCCAATCCGCCTCTTTCCCG-AACGTTTGGTTGCCTT 37470 Query 22506 TGCTGTG-GTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaa 22564 ||| ||| || |||||||||||||| || ||| | ||| ||| |||||||| | || | Sbjct 37469 TGC-GTGTGTGGAAGGCATTTTCTTCTCCGGATCGTTTGCAGCAGTCTTTTGGATTAAGA 37411 Query 22565 aaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTC 22624 |||| | ||||||| || |||| ||||| || || |||| ||| |||| || || | Sbjct 37410 AACG-GGGCTTATGCCAGGCTTAACTTTTTCGAACGAACTAATCAGCAGAGACGAAGGAC 37352 Query 22625 TTCATACCGATTTTGCGTGT 22644 ||||||| || ||||| ||| Sbjct 37351 TTCATACGGACTTTGCCTGT 37332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303175018562708