Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq106 113 4e-20 seq9840 111 1e-19 seq1000 100 3e-16 seq9205 98.7 9e-16 seq9278 93.3 4e-14 seq9206 84.2 2e-11 seq451 82.4 7e-11 seq247 82.4 7e-11 >seq106 Length=225739 Score = 113 bits (124), Expect = 4e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || || || | || ||||||||||| |||||||| ||||| Sbjct 79676 CCACCACGCAGACGAAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGCTG 79735 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| |||| | |||||||||||| |||||| Sbjct 79736 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGG 79795 Query 131128 AT 131129 || Sbjct 79796 AT 79797 >seq9840 Length=425 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| ||||||||||| || | || | ||| || || || || || || ||||| ||| Sbjct 416 TCCTCAAGCTGCTTGCCGGCAAAAATGAGACGTTGTTGATCAGGCGGAATCCCTTCCTTG 357 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||||||| ||||| | || | |||||||| ||| |||| |||| ||| | | Sbjct 356 TCTTGGATTTTCGCCTTGACGTTGTCGATAGTATCGGAGGATTCGACTTCGAGGGTGATG 297 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || || || || |||||||| ||||||||||||||| Sbjct 296 GTCTTGCCTGTCAGAGTTTTGACGAAAATCTGCATG 261 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | || || || | ||| | || |||||||| || ||||||||||| Sbjct 261 GCCACCACGGAGGCGAAGAACGAGATGGAGCGTTGACTCCTTCTGGATGTTGTAATCAGA 202 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || |||||| || |||||||| ||| | |||| |||||||| || ||||| Sbjct 201 AAGAGTTCGACCGTCCTCGAGTTGCTTGCCGGCGAAAATTAGGCGCTGCTGATCGGGAGG 142 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 || || || || || ||| | | ||| |||| | || | || |||| ||||| | Sbjct 141 AATGCCCTCCTTATCC-TGAATCTTTGCCTTGACATTGTCGATGGTGTCGGAAGACTCCA 83 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| | || || || ||||||||||| Sbjct 82 CTTCCAGCGTGATCGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCAT 34 >seq1000 Length=18647 Score = 100 bits (110), Expect = 3e-16 Identities = 158/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 46085 TGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGA 46144 |||| |||||| ||||| | || |||||||||| ||||| | | | || | | Sbjct 12179 TGCCTTGCGTGAAGAAGAAGGCAGAATGGGCGATGACATGGATTACCGACCGCTCGCGGT 12238 Query 46145 CTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTT 46204 | ||||| |||||| | |||| ||| | ||| || ||| | || ||||| ||| | Sbjct 12239 CGTTCGCTGAGCGTCTTTTGGCATTTTCCTGTGTTGAAGGCATTTTCTTTTCCGGCTCAT 12298 Query 46205 TTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAAC 46263 |||| || ||||||| ||||| || | ||||| ||||||| || |||| || ||| Sbjct 12299 TTGCAGCTATCTTTTGGATCAAGAAGCGAGGGC-TCATGCCTGGATTGACTTTCTCCAAT 12357 Query 46264 GAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTG 46307 || |||| | ||||||||||| ||||| ||||| ||||| Sbjct 12358 GAATTGATCAGTTGTGACGAGGGCCTCCATACCGACTTCGCGTG 12401 >seq9205 Length=338 Score = 98.7 bits (108), Expect = 9e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| |||||||| |||||| | ||||| |||||| ||||||||||| Sbjct 232 GTAGACTCCTTCTGAATGTTATAATCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCC 291 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||| |||| ||||||||||||||||| || || || || ||||| Sbjct 292 GCGAAGATCAAACGCTGCTGGTCCGGGGGAATACCCTCCTTGTC 335 >seq9278 Length=305 Score = 93.3 bits (102), Expect = 4e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| |||||||| |||||| | |||||| |||||| ||||||||||| Sbjct 199 GTAGACTCCTTCTGAATGTTATAATCGGAAAGAGTGCGCCCGTCCTCGAGCTGCTTGCCC 258 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 || |||| |||||||| |||||||| || || || || ||||| Sbjct 259 GCAAAGATCAAACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTC 302 >seq9206 Length=299 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| |||||||||||||| | ||||| || || |||||||| || Sbjct 164 GTGGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTCCAGCTGCTTTCCG 105 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| || ||||| ||||| || ||||| || || ||||| ||| || |||| Sbjct 104 GCGAAGATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTG 45 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 | | || | ||||| | |||||||| || | ||| | ||| Sbjct 44 ACGTTGTCAATGGTATCCGAGGACTCGACTTCCAGGGTGATGGT 1 >seq451 Length=165701 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || || || || | ||||||||||| || |||||||| ||||| | ||||| | Sbjct 12694 CGTAGGACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTGCGGCCG 12635 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGAT 131129 ||||| ||||||||||| || |||| | ||||| ||||| || ||||| Sbjct 12634 TCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGCGGGAT 12585 >seq247 Length=45445 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 46102 AAAACCGA-CTGGGCGATGAAGTGGATCAAC-AGCAGCACCGCGACTTTCGCCGAGCGTA 46159 |||| ||| |||||| |||| ||||| || | | |||| ||||| |||| ||| Sbjct 37538 AAAAGCGAACTGGGCATTGAAATGGATTAATGATCCAATCCGCCTCTTTC-CCGAACGTT 37480 Query 46160 TGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTT 46219 |||| ||||||||| |||||| ||| | || || || || ||||| || |||||| Sbjct 37479 TGGTTGCCTTTGCGTGTGTGGAAGGCATTTTCTTCTCCGGATCGTTTGCAGCAGTCTTTT 37420 Query 46220 ACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCG 46279 || || | |||| | ||||| ||| | || ||| ||||| || || | | Sbjct 37419 GGATTAAGAAACGGGGCTT-ATGCCAGGCTTAACTTTTTCGAACGAACTAATCAGCAGAG 37361 Query 46280 ACGAGGGCCTGCATACGGACTTTGCGTGTCT 46310 |||| || || |||||||||||||| ||||| Sbjct 37360 ACGAAGGACTTCATACGGACTTTGCCTGTCT 37330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471949703688960