Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq668 140 2e-28 seq2021 132 3e-26 seq9840 95.1 8e-15 >seq668 Length=8863 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 5390 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 5331 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 5330 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 5296 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 3386 CTCTCTTTCCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 3327 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 3326 GCCAATATTTAGCTTTA 3310 >seq2021 Length=7336 Score = 132 bits (146), Expect = 3e-26 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 38110 CCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTA 38169 |||| ||||| ||||||||||| |||||||||||||| |||||| ||| |||| || | Sbjct 265 CCAAGTGAAGGGTGCTCTCCTTCTGAATATTGTAATCCGACAAAGTACGCCCGTCCTCCA 206 Query 38170 ATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAA 38229 | || || |||||||| || ||||| || || || | || | ||| || || ||| || Sbjct 205 ACTGCTTCCCGGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTGAA 146 Query 38230 TTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTAC 38289 | || ||||||||| | | ||||| | || ||||| || || || || || | Sbjct 145 TCTTCGCCTTCACATTGTCAATCGTATCCGAAGACTCGACTTCCAACGTGATCGTCTTTC 86 Query 38290 CCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| || |||||||| || ||||| Sbjct 85 CCGTCAAAGTCTTCACGAAGATTTGCAT 58 >seq9840 Length=425 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||| || || ||||||||||| | | || |||| || | ||| || ||||| || Sbjct 225 CTCCTTCTGGATGTTGTAATCAGAAAGAGTTCGACCGTCCTCGAGTTGCTTGCCGGCGAA 166 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 |||||||| || ||||||| || | ||| || || ||| ||| ||| ||| ||||| Sbjct 165 AATTAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTATCCTGAATCTTTGCCTTGACATT 106 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | || || || | || ||||| | || || || || || ||||| || ||||| Sbjct 105 GTCGATGGTGTCGGAAGACTCCACTTCCAGCGTGATCGTCTTGCCGGTCAATGTCTTCAC 46 Query 38306 GAATATCTGCAT 38317 || |||||||| Sbjct 45 AAAAATCTGCAT 34 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334903545284714