Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq9840 114 1e-20 seq2021 100 2e-16 seq9206 84.2 2e-11 >seq9840 Length=425 Score = 114 bits (126), Expect = 1e-20 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||| || | ||||| | ||||||||||| || Sbjct 34 ATGCAGATTTTTGTGAAGACATTGACCGGCAAGACGATCACGCTGGAAGTGGAGTCTTCC 93 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || | ||||| | ||| || || || || ||||| || || Sbjct 94 GACACCATCGA--CAATGTCAAGGCAAAGATTCA-GGATAAGGAGGGCATTCCTCCCGAT 150 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | ||||| |||||||| ||| | || || | ||| ||| | |||||| Sbjct 151 CAGCAGCGCCTAATTTTCGCCGGCAAGCAACTCGAGGACGGTCGAACTCTTTCTGATTAC 210 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || ||||| ||| | || || Sbjct 211 AACATCCAGAAGGAGTCAACGCTCCATCTCGTTCT 245 Score = 107 bits (118), Expect = 2e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || ||| |||| || || ||||||| ||||||| || || || Sbjct 262 ATGCAGATTTTCGTCAAAACTCTGACAGGCAAGACCATCACCCTCGAAGTCGAATCCTCC 321 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || |||||||| | ||| |||||| ||||| ||||||||||| ||||| ||| Sbjct 322 GATACTATCGACAACGTCAAGGCGAAAATCCAAGACAAGGAAGGGATTCCGCCTGATCAA 381 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCAC 25162 || || | |||||||||||||| || | || |||| |||||| Sbjct 382 CAACGTCTCATTTTTGCCGGCAAGCAGCTTGAGGATGGTCGCAC 425 >seq2021 Length=7336 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| || || | ||||| | ||||| ||||| || Sbjct 58 ATGCAAATCTTCGTGAAGACTTTGACGGGAAAGACGATCACGTTGGAAGTCGAGTCTTCG 117 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || |||| || || | ||| || || || || ||||| |||||||| Sbjct 118 GATACGATTGACAATGTGAAGGCGAAGATTCA-GGATAAGGAGGGCATTCCTCCTGACCA 176 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || |||||||| || || || || || | || ||| || |||||||| Sbjct 177 GCAGCGCCTCATCTTTGCCGGGAAGCAGTTGGAGGACGGGCGTACTTTGTCGGATTACAA 236 Query 25178 TATTCAAAAAGA 25189 |||||| || || Sbjct 237 TATTCAGAAGGA 248 >seq9206 Length=299 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 25033 CCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTG 25092 ||||||| | ||||| ||||| || || || || || | ||| || ||| | Sbjct 2 CCATCACCCTGGAAGTCGAGTCCTCGGATACCATTGACAACGTCAAGGCCAAGATCCAGG 61 Query 25093 ACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAG 25152 |||| || || || || |||||||||||||| | || || ||||| || || | |||| Sbjct 62 ACAAGGAGGGTATCCCCCCTGACCAACAGCGCTTGATCTTCGCCGGAAAGCAGCTGGAAG 121 Query 25153 ATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 ||| ||||||| | |||||||| ||||| || || ||||| || || Sbjct 122 ATGGTCGCACTCTTTCTGATTACAACATTCAGAAGGAGTCCACTCTTCA 170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433271523007610