Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq9840 127 2e-24 seq9206 91.5 1e-13 seq1422 82.4 6e-11 seq1421 82.4 6e-11 >seq9840 Length=425 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || || ||||| || ||| |||| || |||||||| | || Sbjct 34 ATGCAGATTTTTGTGAAGACATTGACCGGCAAGACGATCACGCTGGAAGTGGAGTCTTCC 93 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| ||| ||||| || |||||||| ||||| |||||||| Sbjct 94 GACACCATCGACAATGTCAAGGCAAAGATTCAGGATAAGGAGGGCATTCCTCCCGATCAG 153 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| || | ||||| || || | || ||||||||| Sbjct 154 CAGCGCCTAATTTTCGCCGGCAAGCAACTCGAGGACGGTCGAACTCTTTCTGATTACAAC 213 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || || || || || || | ||| | ||| Sbjct 214 ATCCAGAAGGAGTCAACGCTCCATCTCGTT 243 Score = 125 bits (138), Expect = 6e-24 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || |||||| | || || || || |||| || ||||| ||| || || Sbjct 262 ATGCAGATTTTCGTCAAAACTCTGACAGGCAAGACCATCACCCTCGAAGTCGAATCCTCC 321 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | |||| ||||| ||||||||||| || ||||| || |||||| Sbjct 322 GATACTATCGACAACGTCAAGGCGAAAATCCAAGACAAGGAAGGGATTCCGCCTGATCAA 381 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCAC 22382 |||||||| || ||||||||||| ||| | |||||| ||||| Sbjct 382 CAACGTCTCATTTTTGCCGGCAAGCAGCTTGAGGATGGTCGCAC 425 >seq9206 Length=299 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 22256 TCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACA 22315 |||| || ||||| || || | |||||| | ||| | |||| || || || |||| Sbjct 5 TCACCCTGGAAGTCGAGTCCTCGGATACCATTGACAACGTCAAGGCCAAGATCCAGGACA 64 Query 22316 AGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATC 22375 |||||||||| || || || ||||| || | || || ||||| || ||| | || ||| Sbjct 65 AGGAGGGTATCCCCCCTGACCAACAGCGCTTGATCTTCGCCGGAAAGCAGCTGGAAGATG 124 Query 22376 ACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||||| | || |||||||||||||| || || ||||| Sbjct 125 GTCGCACTCTTTCTGATTACAACATTCAGAAGGAGTCCAC 164 >seq1422 Length=2909 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 22324 ATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACC 22383 || || ||||| ||||| ||||| || |||||||| || ||| | || ||| || ||| Sbjct 2731 ATCCCGCCCGACCAACAGCGTCTGATCTTTGCCGGGAAGCAGCTTGAAGATGGGCGTACC 2790 Query 22384 GTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGA 22443 |||| || ||||||||||| ||||| |||||| | ||| | || | || | ||||| Sbjct 2791 CTCTCAGACTACAACATTCAGAAAGAGTCCACCCTTCATCTTGTGCTCCGTCTTCGCGGC 2850 Query 22444 GGT 22446 ||| Sbjct 2851 GGT 2853 >seq1421 Length=2902 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 22324 ATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACC 22383 || || ||||| ||||| ||||| || |||||||| || ||| | || ||| || ||| Sbjct 2724 ATCCCGCCCGACCAACAGCGTCTGATCTTTGCCGGGAAGCAGCTCGAAGATGGGCGTACC 2783 Query 22384 GTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGA 22443 |||| || ||||||||||| ||||| |||||| | ||| | || | || | ||||| Sbjct 2784 CTCTCAGACTACAACATTCAGAAAGAGTCCACCCTTCATCTTGTGCTCCGTCTTCGCGGC 2843 Query 22444 GGT 22446 ||| Sbjct 2844 GGT 2846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419673295538110