Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq2021 111 1e-19 seq9840 89.7 4e-13 >seq2021 Length=7336 Score = 111 bits (122), Expect = 1e-19 Identities = 149/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 33925 TGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGCTCGTCGTCCAATTGC 33984 ||||| ||||||||||||||||| |||||||| | ||| ||| |||| ||||| ||| Sbjct 260 TGAAGGGTGCTCTCCTTCTGAATATTGTAATCCGACAAAGTACGCCCGTCCTCCAACTGC 201 Query 33985 TTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCCATAATTTTT 34044 || |||||||| || ||||||||||| || || | || ||| || ||| ||| || Sbjct 200 TTCCCGGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTGAATCTTC 141 Query 34045 TGCTT---AATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTTATTGTTTTTCCG 34101 ||| | || | || |||| | ||| ||| ||| | ||| || || ||||| Sbjct 140 GCCTTCACATTGTCAATC---GTATCCGAAGACTCGACTTCCAACGTGATCGTCTTTCCC 84 Query 34102 GTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || ||||| ||||||||||| Sbjct 83 GTCAAAGTCTTCACGAAGATTTGCAT 58 >seq9840 Length=425 Score = 89.7 bits (98), Expect = 4e-13 Identities = 154/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || ||||| ||||| ||||||||| ||||||||||| | | ||| Sbjct 251 AGGCGAAGAACGAGATGGAGCGTTGACTCCTTCTGGATGTTGTAATCAGAAAGAGTTCGA 192 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | |||||||||||| || || |||||||||||||| || | || ||| Sbjct 191 CCGTCCTCGAGTTGCTTGCCGGCGAAAATTAGGCGCTGCTGATCGGGAGGAATGCCCTCC 132 Query 34030 TTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTCGCATTCGACC 34086 || ||| ||| ||| ||| || | || | | || | ||| || ||| | | Sbjct 131 TTATCCTGAATCTTTGCCTTGACATTG---TCGATGGTGTCGGAAGACTCCACTTCCAGC 75 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || || ||||| | ||| |||||||| || ||||| Sbjct 74 GTGATCGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCAT 34 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397010649616588