Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq9840 125 2e-23 seq2021 109 1e-18 seq32 91.5 3e-13 seq179 87.8 4e-12 seq7286 84.2 5e-11 >seq9840 Length=425 Score = 125 bits (138), Expect = 2e-23 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 288310 GTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATT 288369 ||||| || || || | || || || || || || ||||| |||||| | || || Sbjct 425 GTGCGACCATCCTCAAGCTGCTTGCCGGCAAAAATGAGACGTTGTTGATCAGGCGGAATC 366 Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || || ||||||||||| || ||||| || |||| |||| ||||| |||||| Sbjct 365 CCTTCCTTGTCTTGGATTTTCGCCTTGACGTTGTCGATAGTATCGGAGGATTCGACTTCG 306 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| || |||||||| |||||||| |||||||| Sbjct 305 AGGGTGATGGTCTTGCCTGTCAGAGTTTTGACGAAAATCTGCAT 262 Score = 122 bits (134), Expect = 2e-22 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | ||| |||||||| | ||| || || ||||| || || | Sbjct 264 CATG-CCACCACGGAGGCGAAGAACGAGATGGAGCGTTGACTCCTTCTGGATGTTGTAAT 206 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || || || ||||| || | ||| || || ||||| || || ||||| ||| Sbjct 205 CAGAAAGAGTTCGACCGTCCTCGAGTTGCTTGCCGGCGAAAATTAGGCGCTGCTGATCGG 146 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || || || |||||||| || || || || || || || || | ||| || | Sbjct 145 GAGGAATGCCCTCCTTATCCTGAATCTTTGCCTTGACATTGTCGATGGTGTCGGAAGACT 86 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| |||||||||||||| ||||||| ||||| || || |||||||| Sbjct 85 CCACTTCCAGCGTGATCGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCAT 34 >seq2021 Length=7336 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||||| || || || ||||| || || | | || || ||||| || || || Sbjct 260 TGAAGGGTGCTCTCCTTCTGAATATTGTAATCCGACAAAGTACGCCCGTCCTCCAACTGC 201 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || ||||| || ||||| || | || || || || |||||||| || ||| Sbjct 200 TTCCCGGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTGAATCTTC 141 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || ||||| || || || | ||| || || ||||| | |||||||||||| || ||| Sbjct 140 GCCTTCACATTGTCAATCGTATCCGAAGACTCGACTTCCAACGTGATCGTCTTTCCCGTC 81 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 | |||||| ||||| || ||||| Sbjct 80 AAAGTCTTCACGAAGATTTGCAT 58 >seq32 Length=1481398 Score = 91.5 bits (100), Expect = 3e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 269152 ATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTC 269211 || || |||||||| || | ||| |||||| || ||||| || || || ||| || || Sbjct 1081876 ATTGGCATGAATGCTGACTTGATGTGTCAATACATTGAATTTGTTGCCGACCGTCTCCTC 1081817 Query 269212 ACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTA 269271 || ||||| |||| || |||| || |||| || || |||| ||| ||||| | Sbjct 1081816 GTTGCCCTCGGAAATGACAAGTTGTATAACTCGACAAACCCATTCGACTTCATGGACATG 1081757 Query 269272 ATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTA 269321 || || || | || ||||| ||||||||||| ||||| ||| ||||| Sbjct 1081756 ATCTCACTGCAGGGCAAGACAAACTTCTTCGAGAAGCGCGTCTCAGACTA 1081707 >seq179 Length=47363 Score = 87.8 bits (96), Expect = 4e-12 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 269147 CTATGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTA 269206 || ||||||||||||| ||||| |||||||| | || ||||| || |||||||| | Sbjct 9523 CTCTGATCGGTATGAACGCCGACCTCATGAAACGGTACATCGAGTTTGTGGCTGACAGAC 9582 Query 269207 TCTTCACGGCACTCGGTTATGAGAAAGTGTACAAT-TCGAAGAATCCCTTCGCCTTTATG 269265 | || | || ||||| | ||| | | || ||||| || || || | ||| ||| Sbjct 9583 TGTTAGCTGCGCTCGGCCTTTCGAAGCACTTCCATGTCGAA-AACCCTTTTGACTTCATG 9641 Query 269266 GAACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTAT 269322 || | || || |||||||||||||| ||||| || || || || ||| ||| ||| Sbjct 9642 GACATGATCTCCCTCGAAGGAAAGACCAACTTTTTTGAGAAACGGGTCGCCGAGTAT 9698 >seq7286 Length=304 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| ||||||||||| || ||||| || || || || | || || || || ||| Sbjct 162 CCTTCCTTATCCTGGATCTTGGCTTTGACATTGTCAATGGTGTCCGATGACTCAACCTCG 221 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||| || || ||||||||||| |||||||| Sbjct 222 AGGGTAATCGTCTTCCCAGTGAGGGTCTTGACGAAAATCTGCAT 265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179492767440532