Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1000 136 5e-27 seq4743 96.9 4e-15 seq247 95.1 1e-14 seq4742 91.5 2e-13 seq925 87.8 2e-12 >seq1000 Length=18647 Score = 136 bits (150), Expect = 5e-27 Identities = 287/420 (68%), Gaps = 10/420 (2%) Strand=Plus/Minus Query 126059 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCC 126118 ||||| |||||||||| ||| | |||||| ||||| || ||| |||||||| || Sbjct 12386 TGGAGGCCCTCGTCACAACTGATCAATTCATTGGAGAAAGTCAATCCAGGCATGAGCCCT 12327 Query 126119 CGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACAC 126178 |||||||| | ||| || || || |||||| || || ||||| || || || ||||| Sbjct 12326 CGCTTCTTGATCCAAAAGATAGCTGCAAATGAGCCGGAAAAGAAAATGCCTTCAACACAG 12267 Query 126179 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGA-CTTTGTGTCAAACCACTTCATCGC 126237 | || || || ||||||||||| || || ||||| | | || || ||| ||||||| Sbjct 12266 GAAAATGCCAAAAGACGCTCAGCGAACGACCGCGAGCGGTCGGT-AATCCATGTCATCGC 12208 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGT---TCCTT 126294 ||| | ||||| |||| | || || || || | ||| || | || ||| |||| Sbjct 12207 CCATTCTGCCTTCTTCTTCACGCAAGGCACAGTTTCGATAGCGTTGAAAAGTAAGGCCTT 12148 Query 126295 CTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGAC 126354 || | || ||||| ||||||| | || || | || |||||||| || || Sbjct 12147 CTCCT-TG--GGATCGGTGATGTAGGTGTCGATTAACAAGGAGTATGTTTCAGAATGAAC 12091 Query 126355 CATTTC-ATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCAT 126413 |||| || ||| | ||| | || ||||||| | ||||| || | ||||| | Sbjct 12090 ATTTTCAATCATGAC-CTGGAAGGCATAGAAAGCCCAAGCTTCTCTCGGCGAAACCTCCT 12032 Query 126414 CGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCA 126473 || ||||| | | ||||| ||||||||||||||| | |||||||| |||| Sbjct 12031 GAGCGAAATTTTCCAGCAAGTTCTCGTTGACAATTCCATCGGACGCCGCAAAAAAAGCCA 11972 >seq4743 Length=11411 Score = 96.9 bits (106), Expect = 4e-15 Identities = 210/310 (68%), Gaps = 6/310 (2%) Strand=Plus/Plus Query 172651 ATCCGTCATAATCATAAGCCGACCATAGCG-AAGCTC--GGAAACATCTTGATACTCCTT 172707 ||| ||||||||||| || ||||| || || |||||| || | || || || ||||| Sbjct 7358 ATCAGTCATAATCATGAGTCGACCGTACCGCAAGCTCATGGTAT--TCGTG-TAGTCCTT 7414 Query 172708 ACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTG 172767 || || || |||| ||||||||||| || | || |||| ||| ||| ||| Sbjct 7415 GTTATGCTGCAGCCCCATGATCTTCTTGATATTCTGGATTTCTTCGTTCTTCATGATTTG 7474 Query 172768 CGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTG 172827 | | | || ||||| ||||| |||| || || || |||||||||||| ||| Sbjct 7475 CTCGTGTCGCGCCTCGCGAACATTGAGCAACTTGCCGCGAAGGGGGAACACACCGAAGTT 7534 Query 172828 ATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGT 172887 || | ||||| || |||||||| || || |||| || ||||| || || || || Sbjct 7535 GTCTCTGCCAACAACTCCGAGACCAGCCACCGCCAGGGCTTTAGCGGAGTCTCCTTCGGT 7594 Query 172888 CACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTT 172947 | || || ||||| || | ||| || ||||| ||||| |||||| | ||| Sbjct 7595 GAGAATCAGGGTACAGTTCTTCGCGTGTTTGGTTCCCGCGTTGTTGGCATCGGAGAGCTT 7654 Query 172948 GGGAATACCA 172957 || | |||| Sbjct 7655 GGTCAAACCA 7664 >seq247 Length=45445 Score = 95.1 bits (104), Expect = 1e-14 Identities = 171/246 (70%), Gaps = 7/246 (3%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || || || || ||||| | | ||| ||||| ||||| || | || Sbjct 37335 GGCAAAGTCCGTATGAAGTCCTTCGTCTCTGCTGATTAGTTCGTTCGAAAAAGTTAAGCC 37394 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 |||||| || ||||| ||||| | ||| || | || ||| || || |||||||| || Sbjct 37395 TGGCATAAG-CCCCGTTTCTTAATCCAAAAGACTGCTGCAAACGATCCGGAGAAGAAAAT 37453 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTC--- 126222 || ||||||||||| || |||| | ||| || | |||| ||| || ||| || Sbjct 37454 GCCTTCCACACACGCAAAGGCAACCAAACGTTCGGGAAAGAGGCG-GA--TTGGATCATT 37510 Query 126223 AAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTC 126282 || ||| |||| ||||| | ||| |||| || |||||| || | |||| ||| || | Sbjct 37511 AATCCATTTCAATGCCCAGTTCGCTTTTTCCTGGATACAGGGAATAGTCTCGATAGCGTT 37570 Query 126283 AAAGAG 126288 ||||| Sbjct 37571 GAAGAG 37576 >seq4742 Length=7625 Score = 91.5 bits (100), Expect = 2e-13 Identities = 209/310 (67%), Gaps = 6/310 (2%) Strand=Plus/Plus Query 172651 ATCCGTCATAATCATAAGCCGACCATAGCG-AAGCTC--GGAAACATCTTGATACTCCTT 172707 ||| ||||||||||| || || ||||| || |||||| || | || || || ||||| Sbjct 2290 ATCAGTCATAATCATGAGTCGCCCATACCGCAAGCTCATGGTAT--TCGTG-TAGTCCTT 2346 Query 172708 ACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTG 172767 || || || |||| ||||||||||| || | || |||| ||| ||| ||| Sbjct 2347 GTTATGCTGCAGCCCCATGATCTTCTTGATATTCTGGATTTCTTCGTTCTTCATGATTTG 2406 Query 172768 CGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTG 172827 | | | || || ||||| || |||| || || || |||||||||||| ||| Sbjct 2407 CTCATGTCGCGCCTCACGGACGTTAAGCAACTTGCCGCGAAGGGGGAACACACCGAAGTT 2466 Query 172828 ATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGT 172887 || | ||||| || |||||||| || || |||| || ||||| || || || || Sbjct 2467 GTCTCTGCCAACAACTCCGAGACCAGCCACCGCCAGGGCTTTGGCGGAGTCTCCTTCGGT 2526 Query 172888 CACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTT 172947 | || || || || || | ||| || ||||| ||||| |||||| || ||| Sbjct 2527 GAGAATCAGGGTGCAGTTCTTCGCGTGTTTGGTTCCCGCATTGTTGGCATCGGACAGCTT 2586 Query 172948 GGGAATACCA 172957 || | |||| Sbjct 2587 GGTCAGACCA 2596 >seq925 Length=43645 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 || || ||| ||| |||||||| || ||| ||| || || || | ||| | |||||| Sbjct 13688 GCGAAATCTGTGTGAAGACCCTCATCTCGGCTGATAAGCTCGTTTGCGAACGATAGTCCT 13747 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| | ||||| ||||||||||| || ||||| ||||| || || ||||| || Sbjct 13748 GGCATCAAACCCCTTTTCTTCAACCAAAAGATCGCGGCGAATGAGCCGGAAAAGAAAATC 13807 Query 126167 CCCTCCACACACGCGAACGCAAA 126189 || || || || ||||| || || Sbjct 13808 CCTTCTACGCATGCGAAAGCCAA 13830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597273748757520