Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq9840 118 1e-21 seq1422 109 5e-19 seq2021 105 7e-18 seq1421 105 7e-18 seq247 91.5 1e-13 >seq9840 Length=425 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | ||| || || || || ||||||||||| | | || || |||| Sbjct 246 AAGAACGAGATGGAGCGTTGACTCCTTCTGGATGTTGTAATCAGAAAGAGTTCGACCGTC 187 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || || ||||||||||| |||| || |||||||| ||||||||||| || || || || Sbjct 186 CTCGAGTTGCTTGCCGGCGAAAATTAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTATC 127 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || ||| ||| ||| || | || || | |||||||| | || | || Sbjct 126 CTGAATCTTTGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCCAGCGTGATCGT 67 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||||| || || || ||||| ||||| Sbjct 66 CTTGCCGGTCAATGTCTTCACAAAAATCTGCAT 34 Score = 111 bits (122), Expect = 2e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 64280 GTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATT 64339 ||||| | || |||||||||||||||||| ||||||| || || || || || ||||| Sbjct 425 GTGCGACCATCCTCAAGCTGCTTGCCGGCAAAAATGAGACGTTGTTGATCAGGCGGAATC 366 Query 64340 CCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCT 64399 ||||| || ||||| ||||| ||| || || | ||||| || || ||||| Sbjct 365 CCTTCCTTGTCTTGGATTTTCGCCTTGACGTTGTCGATAGTATCGGAGGATTCGACTTCG 306 Query 64400 ACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | ||||||||| |||| |||||| |||||||| ||||| Sbjct 305 AGGGTGATGGTCTTGCCTGTCAGAGTTTTGACGAAAATCTGCAT 262 >seq1422 Length=2909 Score = 109 bits (120), Expect = 5e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||||||||| | | ||||| ||||||| || || ||||| ||||||||||| |||| Sbjct 2853 ACCGCCGCGAAGACGGAGCACAAGATGAAGGGTGGACTCTTTCTGAATGTTGTAGTCTGA 2794 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||| ||| | |||||||||||||| |||||| | || || ||||| |||||||| || Sbjct 2793 GAGGGTACGCCCATCTTCAAGCTGCTTCCCGGCAAAGATCAGACGCTGTTGGTCGGGCGG 2734 Query 64336 AAT 64338 || Sbjct 2733 GAT 2731 >seq2021 Length=7336 Score = 105 bits (116), Expect = 7e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || ||||| |||||||| | | || ||| |||| || | |||||| |||||| | Sbjct 248 TCCTTCTGAATATTGTAATCCGACAAAGTACGCCCGTCCTCCAACTGCTTCCCGGCAAAG 189 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 ||||| ||||||||||| |||||||| || || || || || || || ||| ||| Sbjct 188 ATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTGAATCTTCGCCTTCACATTG 129 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | ||||| | || ||||| | || | ||||| || |||||||| || ||| Sbjct 128 TCAATCGTATCCGAAGACTCGACTTCCAACGTGATCGTCTTTCCCGTCAAAGTCTTCACG 69 Query 64433 AAAATTTGCAT 64443 || |||||||| Sbjct 68 AAGATTTGCAT 58 >seq1421 Length=2902 Score = 105 bits (116), Expect = 7e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||||||||| | | ||||| ||||||| || || ||||| ||||||||||| |||| Sbjct 2846 ACCGCCGCGAAGACGGAGCACAAGATGAAGGGTGGACTCTTTCTGAATGTTGTAGTCTGA 2787 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||| ||| | ||||| |||||||| |||||| | || || ||||| |||||||| || Sbjct 2786 GAGGGTACGCCCATCTTCGAGCTGCTTCCCGGCAAAGATCAGACGCTGTTGGTCGGGCGG 2727 Query 64336 AAT 64338 || Sbjct 2726 GAT 2724 >seq247 Length=45445 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/146 (75%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 132536 TTTGTATTCGCCCACTCGACGTTCGAAAAAGTTTGTCTTGCCCTCCAGCGATATGTTGTT 132595 ||||||||| || ||||| || |||||||||||||| ||||||||||| || | | Sbjct 36998 TTTGTATTCCCCGACTCGTTTCTCAAAAAAGTTTGTCTTACCCTCCAGCGAAATCATATC 37057 Query 132596 CATGAAATTAAAAGGATTGG--GTGTGTTAAAATGTTTGGGTTGTTGCAGCTCTGTAAGC 132653 |||||||| ||| || || | ||| | |||| ||| | || | |||| || |||| Sbjct 37058 CATGAAATCAAAGGGGTTCGCAACGTGGT-AAATCTTT-GATTCTCCCAGCGCTTCAAGC 37115 Query 132654 AACCGATCCGCCACAAACTCGATATA 132679 | |||||||||||||| ||||||| Sbjct 37116 AGACGATCCGCCACAAAAGCGATATA 37141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499578009981360