Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq9840 109 5e-19 seq179 96.9 3e-15 seq247 89.7 5e-13 >seq9840 Length=425 Score = 109 bits (120), Expect = 5e-19 Identities = 145/198 (73%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || |||||||| || | ||| || |||||||||||| || |||| Sbjct 229 TTGACTCCTTCTGGATGTTGTAATCAGAAAGAGTTCGACCGTCCTCGAGTTGCTTGCCGG 170 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | ||||| ||||| || || ||||| || || || || || ||| | |||| || Sbjct 169 CGAAAATTAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTATCC-TGAATCTTTGCCTTG 111 Query 138539 A--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 | |||| | | |||||||| |||||||| || | ||| | ||| || || |||| || Sbjct 110 ACATTGT-CGATGGTGTCGGAAGACTCCACTTCCAGCGTGATCGTCTTGCCGGTCAATGT 52 Query 138597 TTTTACAAAAATCTGCAT 138614 || |||||||||||||| Sbjct 51 CTTCACAAAAATCTGCAT 34 >seq179 Length=47363 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/191 (73%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 52650 GCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTT 52709 ||| |||| || | ||| | || |||||||| | |||| ||||||||||||| Sbjct 9510 GCGTTGCCCGTAGCTCTGATCGGTATGAACGCCGACCTCATGAAACGGTACATCGAGTTT 9569 Query 52710 GTGGCGGATCGTCTGTT-GGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCG-CAATC 52767 ||||| || | ||||| | ||| |||||| | | ||| ||||| | | ||| || | Sbjct 9570 GTGGCTGACAGACTGTTAGCTGC-GCTCGGCCTTTCGAAGCACTTCCATG-TCGAAAACC 9627 Query 52768 CGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAG 52827 | ||||| || ||| ||| || || || || || |||||||||||||| ||||| || | Sbjct 9628 CTTTTGACTTCATGGACATGATCTCCCTCGAAGGAAAGACCAACTTTTTTGAGAAACGGG 9687 Query 52828 TCGGCGAGTAT 52838 ||| ||||||| Sbjct 9688 TCGCCGAGTAT 9698 >seq247 Length=45445 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 52696 AGTACATCGAGTTTGTGGCGGATCGTCTG-TTGGTGCAGCTCGGGCAGCCAAAGTACTTC 52754 |||| |||| |||||||||||||||||| ||| || ||| || | ||||| | | Sbjct 37143 AGTATATCGCTTTTGTGGCGGATCGTCTGCTTGAAGC-GCTGGGAGAATCAAAGATTTAC 37085 Query 52755 AACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTT 52814 ||| | || || ||||| || ||| | | |||||||| ||||| ||||| |||||| Sbjct 37084 CACGTTGCGAACCCCTTTGATTTCATGGATATGATTTCGCTGGAGGGTAAGACAAACTTT 37025 Query 52815 TTCGAGAAGCGAGTCGGCGAGTATAA 52840 || ||||| |||||||| || || || Sbjct 37024 TTTGAGAAACGAGTCGGGGAATACAA 36999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496196062123680