Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq9840 116 4e-21 seq9206 95.1 1e-14 seq32 91.5 1e-13 seq247 82.4 7e-11 >seq9840 Length=425 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | || | ||| | ||| ||||| || || || |||||||| Sbjct 260 CCACCACGGAGGCGAAGAACGAGATGGAGCGTTGACTCCTTCTGGATGTTGTAATCAGAA 201 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || || || || || ||| | || | ||||||||||||||||| Sbjct 200 AGAGTTCGACCGTCCTCGAGTTGCTTGCCGGCGAAAATTAGGCGCTGCTGATCGGGAGGA 141 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||| ||| ||| | | ||| |||| | |||| |||||| | | ||| || Sbjct 140 ATGCCCTCCTTATCC-TGAATCTTTGCCTTGACATTGTCGATGGTGTCGGAAGACTCCAC 82 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||| |||||||||| || || |||||||||||||| Sbjct 81 TTCCAGCGTGATCGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCAT 34 Score = 95.1 bits (104), Expect = 1e-14 Identities = 122/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 126950 GTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATG 127009 |||||| ||| || ||||| || || || | || | || || ||||| || || || Sbjct 425 GTGCGACCATCCTCAAGCTGCTTGCCGGCAAAAATGAGACGTTGTTGATCAGGCGGAATC 366 Query 127010 CCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTC 127068 || |||||||| ||||||| ||||| ||||| ||| || || | |||||||| Sbjct 365 CCTTCCTTGTCTTGGATTTTCGCCTTGACGTTGT-CGATAGTATCGGAGGATTCGACTTC 307 Query 127069 GACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||| | || ||||| ||||||||||| || |||||||||||| Sbjct 306 GAGGGTGATGGTCTTGCCTGTCAGAGTTTTGACGAAAATCTGCATG 261 >seq9206 Length=299 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| |||||||| | |||||| ||| || ||||| ||||| Sbjct 164 GTGGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTCCAGCTGCTTTCCG 105 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| ||||| || || || || || |||||||||||| ||| || |||| Sbjct 104 GCGAAGATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTG 45 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074 | |||| || | ||| |||| ||||||||| | ||| Sbjct 44 ACGTTG-TCAATGGTATCCGAGGACTCGACTTCCAGGGT 7 >seq32 Length=1481398 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 47377 AGTTTTTCGCCGAGGCTCTGCCCG--AATCTTTAGTGGGAATGAACGCGGAGATGATGAG 47434 |||||||| | || || ||||| | || || | || ||||| || || ||||| | Sbjct 1081908 AGTTTTTCTCAGATGCACTGCCAGTGAAGCTCA--TTGGCATGAATGCTGACTTGATGTG 1081851 Query 47435 AAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTA 47494 | ||||| |||||||| |||||||| || |||||| || || |||| | || Sbjct 1081850 TCAATACATTGAATTTGTTGCCGACCGTCTCCTCGTTGCCCTCGGAAATGACAAGTTGTA 1081791 Query 47495 CCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTT 47554 || | || |||||||| || ||| ||| || || || |||||||||| ||||| Sbjct 1081790 TAACTCGACAAACCCATTCGACTTCATGGACATGATCTCACTGCAGGGCAAGACAAACTT 1081731 Query 47555 TTTCGAGAAGCGCGTC 47570 ||||||||||||||| Sbjct 1081730 CTTCGAGAAGCGCGTC 1081715 >seq247 Length=45445 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 47437 AGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAA-AGTATCCCAAGATTTAC 47495 |||| |||| ||||| || || || ||||| | ||| || ||| ||||||||| Sbjct 37143 AGTATATCGCTTTTGTGGCGGATCGTCTGCTTGAAGCGCTGGGAGAATCA-AAGATTTAC 37085 Query 47496 CACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTT 47555 ||| | ||| || || || || ||| | | |||||||| ||||| ||||| |||||| Sbjct 37084 CACGTTGCGAACCCCTTTGATTTCATGGATATGATTTCGCTGGAGGGTAAGACAAACTTT 37025 Query 47556 TTCGAGAAGCGCGTCGGCGAATATAAA 47582 || ||||| || ||||| ||||| ||| Sbjct 37024 TTTGAGAAACGAGTCGGGGAATACAAA 36998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475437237430560