Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1000 127 3e-24 seq4743 105 8e-18 seq4742 100 3e-16 seq247 98.7 1e-15 seq925 91.5 2e-13 >seq1000 Length=18647 Score = 127 bits (140), Expect = 3e-24 Identities = 285/420 (68%), Gaps = 10/420 (2%) Strand=Plus/Minus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 ||||| |||||||||| ||| | |||||| ||||| || || |||||||| || Sbjct 12386 TGGAGGCCCTCGTCACAACTGATCAATTCATTGGAGAAAGTCAATCCAGGCATGAGCCCT 12327 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 |||||||| | ||| || || || ||||||||| || ||||| || || || ||||| Sbjct 12326 CGCTTCTTGATCCAAAAGATAGCTGCAAATGAGCCGGAAAAGAAAATGCCTTCAACACAG 12267 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGA-CTTTGTATCAAACCACTTCATCGC 127710 | || || || |||||||| || || || || || | | | || ||| ||||||| Sbjct 12266 GAAAATGCCAAAAGACGCTCAGCGAACGACCGCGAGCGGTCGGT-AATCCATGTCATCGC 12208 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTT---CCTT 127767 ||| | |||||| |||| | || || || || | ||| || | || ||| |||| Sbjct 12207 CCATTCTGCCTTCTTCTTCACGCAAGGCACAGTTTCGATAGCGTTGAAAAGTAAGGCCTT 12148 Query 127768 CTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGAC 127827 || | || ||||| ||||||| | || || | || |||||||| || || Sbjct 12147 CTCCT-TG--GGATCGGTGATGTAGGTGTCGATTAACAAGGAGTATGTTTCAGAATGAAC 12091 Query 127828 CATTTCATT-ATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCAT 127886 ||||| | ||| | ||| | || ||||||| | ||||| || | ||||| | Sbjct 12090 ATTTTCAATCATGAC-CTGGAAGGCATAGAAAGCCCAAGCTTCTCTCGGCGAAACCTCCT 12032 Query 127887 CGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCA 127946 || ||||| | | ||||| ||||||||||||||| | |||||||| |||| Sbjct 12031 GAGCGAAATTTTCCAGCAAGTTCTCGTTGACAATTCCATCGGACGCCGCAAAAAAAGCCA 11972 >seq4743 Length=11411 Score = 105 bits (116), Expect = 8e-18 Identities = 212/310 (68%), Gaps = 6/310 (2%) Strand=Plus/Plus Query 176671 ATCCGTCATAATCATGAGCCGACCATAGCG-AAGCTC--GGAAACATCTTGATAATCCTT 176727 ||| |||||||||||||| ||||| || || |||||| || | || || || ||||| Sbjct 7358 ATCAGTCATAATCATGAGTCGACCGTACCGCAAGCTCATGGTAT--TCGTG-TAGTCCTT 7414 Query 176728 ACCTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTG 176787 || || || |||| |||||||||| || | || |||| ||| ||| ||| Sbjct 7415 GTTATGCTGCAGCCCCATGATCTTCTTGATATTCTGGATTTCTTCGTTCTTCATGATTTG 7474 Query 176788 CGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCGTAGTG 176847 | | | || ||||| ||||| |||| ||||| || |||||||||||| ||| Sbjct 7475 CTCGTGTCGCGCCTCGCGAACATTGAGCAACTTGCCGCGAAGGGGGAACACACCGAAGTT 7534 Query 176848 ATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGT 176907 || | ||||| || ||||||||| || || |||| || ||||| || || || || Sbjct 7535 GTCTCTGCCAACAACTCCGAGACCAGCCACCGCCAGGGCTTTAGCGGAGTCTCCTTCGGT 7594 Query 176908 CACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTT 176967 | || || ||||| || | ||| || ||||| ||||| |||||| | ||| Sbjct 7595 GAGAATCAGGGTACAGTTCTTCGCGTGTTTGGTTCCCGCGTTGTTGGCATCGGAGAGCTT 7654 Query 176968 GGGAATACCA 176977 || | |||| Sbjct 7655 GGTCAAACCA 7664 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 177728 GAGTAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTCCACCAACAATTCTCTTCTTG 177787 ||||||||||| | | || || |||||||||||||| || ||| | | | |||| | Sbjct 8573 GAGTAGATGTTGGCTAGTTTCGCTCCGTAGCCATTGCGACCGCCAGTCAGTTTTTTCTCG 8632 Query 177788 TTGTCATCGTAGTTTGTACTCGTGAGAAGGTGACCAAAGGTAAGTTCTGG 177837 | ||| |||||||||| | | ||||||||||||||| | |||||||| Sbjct 8633 TCGTCGTCGTAGTTTGAAGAGGAAAGAAGGTGACCAAAGATGAGTTCTGG 8682 >seq4742 Length=7625 Score = 100 bits (110), Expect = 3e-16 Identities = 211/310 (68%), Gaps = 6/310 (2%) Strand=Plus/Plus Query 176671 ATCCGTCATAATCATGAGCCGACCATAGCG-AAGCTC--GGAAACATCTTGATAATCCTT 176727 ||| |||||||||||||| || ||||| || |||||| || | || || || ||||| Sbjct 2290 ATCAGTCATAATCATGAGTCGCCCATACCGCAAGCTCATGGTAT--TCGTG-TAGTCCTT 2346 Query 176728 ACCTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTG 176787 || || || |||| |||||||||| || | || |||| ||| ||| ||| Sbjct 2347 GTTATGCTGCAGCCCCATGATCTTCTTGATATTCTGGATTTCTTCGTTCTTCATGATTTG 2406 Query 176788 CGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCGTAGTG 176847 | | | || || ||||| || |||| ||||| || |||||||||||| ||| Sbjct 2407 CTCATGTCGCGCCTCACGGACGTTAAGCAACTTGCCGCGAAGGGGGAACACACCGAAGTT 2466 Query 176848 ATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGT 176907 || | ||||| || ||||||||| || || |||| || ||||| || || || || Sbjct 2467 GTCTCTGCCAACAACTCCGAGACCAGCCACCGCCAGGGCTTTGGCGGAGTCTCCTTCGGT 2526 Query 176908 CACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTT 176967 | || || || || || | ||| || ||||| ||||| |||||| || ||| Sbjct 2527 GAGAATCAGGGTGCAGTTCTTCGCGTGTTTGGTTCCCGCATTGTTGGCATCGGACAGCTT 2586 Query 176968 GGGAATACCA 176977 || | |||| Sbjct 2587 GGTCAGACCA 2596 >seq247 Length=45445 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/233 (70%), Gaps = 7/233 (3%) Strand=Plus/Plus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 || || || ||||| | | ||| ||||| ||||| || | |||||||| || ||| Sbjct 37348 TGAAGTCCTTCGTCTCTGCTGATTAGTTCGTTCGAAAAAGTTAAGCCTGGCATAAG-CCC 37406 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 || ||||| | ||| || | || ||| || || |||||||| || || ||||||||| Sbjct 37407 CGTTTCTTAATCCAAAAGACTGCTGCAAACGATCCGGAGAAGAAAATGCCTTCCACACAC 37466 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATC---AAACCACTTCATC 127708 || || |||| | ||| |||| |||| |||| ||| ||| || ||| |||| Sbjct 37467 GCAAAGGCAACCAAACGTTCGGGAAAGAGGCGG---ATTGGATCATTAATCCATTTCAAT 37523 Query 127709 GCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAG 127761 ||||| | || |||| || |||||| || | |||| ||| || | ||||| Sbjct 37524 GCCCAGTTCGCTTTTTCCTGGATACAGGGAATAGTCTCGATAGCGTTGAAGAG 37576 >seq925 Length=43645 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 || || ||| ||| |||||||| || ||| ||| || || || | ||| | || ||| Sbjct 13688 GCGAAATCTGTGTGAAGACCCTCATCTCGGCTGATAAGCTCGTTTGCGAACGATAGTCCT 13747 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| | ||||| ||||||||||| || ||||| |||||||| || ||||| ||| Sbjct 13748 GGCATCAAACCCCTTTTCTTCAACCAAAAGATCGCGGCGAATGAGCCGGAAAAGAAAATC 13807 Query 127640 CCCTCCACACACGCGAACGCAAA 127662 || || || || ||||| || || Sbjct 13808 CCTTCTACGCATGCGAAAGCCAA 13830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613425189425040