Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq9840 129 1e-24 seq2021 120 7e-22 seq106 107 5e-18 seq9206 100 7e-16 seq7286 89.7 1e-12 >seq9840 Length=425 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || ||||| || |||||||| |||| |||||| |||| | ||| | || || Sbjct 245 AGAACGAGATGGAGCGTTGACTCCTTCTGGATGTTGTAATCAGAAAGAGTTCGACCGTCC 186 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| |||||||| || || |||||||| || ||| ||| || || ||| Sbjct 185 TCGAGTTGCTTGCCGGCGAAAATTAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTATCC 126 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||| ||| || |||| |||||| | | || || |||| |||||||||| Sbjct 125 TGAATCTTTGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCCAGCGTGATCGTC 66 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || ||||||||||| || Sbjct 65 TTGCCGGTCAATGTCTTCACAAAAATCTG 37 >seq2021 Length=7336 Score = 120 bits (132), Expect = 7e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 199438 CTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAA 199497 |||||| || | ||||| || | |||||| | || || |||| |||||| ||||| || Sbjct 249 CTCCTTCTGAATATTGTAATCCGACAAAGTACGCCCGTCCTCCAACTGCTTCCCGGCAAA 190 Query 199498 GATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGA 199557 |||||| ||||||||||| ||| ||| || || ||||||||||| |||||| Sbjct 189 GATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTGAATCTTCGCCTTCACATT 130 Query 199558 TTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 || | || || | | || || ||||||||||||||||| ||||| | ||| ||||| Sbjct 129 GTCAATCGTATCCGAAGACTCGACTTCCAACGTGATCGTCTTTCCCGTCAAAGTCTTCAC 70 Query 199618 AAAAATTTG 199626 || ||||| Sbjct 69 GAAGATTTG 61 >seq106 Length=225739 Score = 107 bits (118), Expect = 5e-18 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||||||||| ||||||||||||| ||||||||| | || | ||||| Sbjct 79691 AGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCATCC 79750 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 ||||||||||| ||||||||||| |||||||||||||| ||| Sbjct 79751 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGA 79792 >seq9206 Length=299 Score = 100 bits (110), Expect = 7e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 199422 CAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCA 199481 ||||||| ||||| |||||||| || | |||||| |||| | ||| | |||||||||| Sbjct 175 CAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTCCA 116 Query 199482 GCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAA 199541 ||||||||||||||||||| | ||||| ||||| || || || || ||||| | Sbjct 115 GCTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCCTGGA 56 Query 199542 TCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 |||| ||| ||| || | ||| || | | || || |||| ||||| || Sbjct 55 TCTTGGCCTTGACGTTGTCAATGGTATCCGAGGACTCGACTTCCAGGGTGATGGT 1 Score = 89.7 bits (98), Expect = 1e-12 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||||||||||||| |||||||||| | ||| | | ||||||||| | ||||| Sbjct 97 ATCTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTCTTTCTGATTACAACATTCAGAAG 156 Query 200998 GAGTCTACTCTTCACCTTG 201016 ||||| ||||||||||||| Sbjct 157 GAGTCCACTCTTCACCTTG 175 >seq7286 Length=304 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || |||||||| ||||||||||| |||| ||||||||| | | || | ||||| || Sbjct 1 ACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCATCCTCA 60 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 ||||||||||| |||||||| || || || ||||| ||| Sbjct 61 AGCTGCTTTCCAGCGAAGATAAGGCGTTGTTGGTCGGGA 99 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178760067846498